RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 PANK2Q9BZ23 570 aa19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 FOXD4L1Q9NU39 408 aa19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 CPSF3Q9UKF6 684 aaKnown RBP19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 MAFFQ9ULX9 164 aa19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 WDR87Q6ZQQ6 2873 aa19.06■□□□□ 0.64
SHKBP1-223ENST00000600552 HEPACAM2A8MVW5 462 aa19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 ZNF263O14978 683 aa19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 FAM189A1O60320 539 aa19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 PIGRP01833 764 aa19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 PSMC3P17980 439 aa19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 GPR17Q13304 367 aa19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 FAM173BQ6P4H8 233 aa19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 SFR1Q86XK3 245 aa19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 TTC8Q8TAM2 541 aa19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 IRF7Q92985 503 aa19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 CLIC6Q96NY7 704 aa19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 SEPT5Q99719 369 aaPredicted RBP19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 OSBPL6Q9BZF3 934 aa19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 CCDC39Q9UFE4 941 aa19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 AGO2Q9UKV8 859 aaKnown RBP19.05■□□□□ 0.64
SHKBP1-223ENST00000600552 GVINP1Q7Z2Y8 2422 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 MTMR11A4FU01 709 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 MICAL2O94851 1124 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 DMDP11532 3685 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 TYMPP19971 482 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 AARSP49588 968 aaKnown RBP eCLIP19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 GTF2BQ00403 316 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 SLC39A12Q504Y0 691 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 STXBP5Q5T5C0 1151 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 RRAGBQ5VZM2 374 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 CENPPQ6IPU0 288 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 METTL23Q86XA0 190 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 MAP4K3Q8IVH8 894 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 CD302Q8IX05 232 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 LEMD2Q8NC56 503 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 CSGALNACT1Q8TDX6 532 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 POMGNT1Q8WZA1 660 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 FAM3CQ92520 227 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 DNASE1L2Q92874 299 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 PYM1Q9BRP8 204 aaKnown RBP19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 OXCT2Q9BYC2 517 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 DNAJC25Q9H1X3 360 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 ATXN3LQ9H3M9 355 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 ZNF334Q9HCZ1 680 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 DPP3Q9NY33 737 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 FBXO4Q9UKT5 387 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 PIAS3Q9Y6X2 628 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 TICRRQ7Z2Z1 1910 aa19.04■□□□□ 0.64
SHKBP1-223ENST00000600552 MAN2B1O00754 1011 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 CYB561D2O14569 222 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 MTAPQ13126 283 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 MYBPC2Q14324 1141 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 TAF12Q16514 161 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 MGAT5BQ3V5L5 792 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 SLFN12LQ6IEE8 588 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 DNAJB7Q7Z6W7 309 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 GIPC2Q8TF65 315 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 RUBCNQ92622 972 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 CLDN23Q96B33 292 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 RSPRY1Q96DX4 576 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 FIZ1Q96SL8 496 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 LPIN3Q9BQK8 851 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 CCSER1Q9C0I3 900 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 MRPL44Q9H9J2 332 aaKnown RBP19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 LMAN1LQ9HAT1 526 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 NCDNQ9UBB6 729 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 SCN1AP35498 2009 aa19.03■□□□□ 0.64
SHKBP1-223ENST00000600552 F5P12259 2224 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 PIRO00625 290 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 DPYSL4O14531 572 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 IDEP14735 1019 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 SCP2P22307 547 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 CCNE1P24864 410 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 GABRR2P28476 465 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 MAGEA9P43362 315 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 KPNA1P52294 538 aaPredicted RBP19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 EPHA5P54756 1037 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 GPR158Q5T848 1215 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 TMC8Q8IU68 726 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 MFSD6LQ8IWD5 586 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 THEM5Q8N1Q8 247 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 OR10T2Q8NGX3 314 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 DEPDC1BQ8WUY9 529 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 TSPAN18Q96SJ8 248 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 GPR88Q9GZN0 384 aa19.02■□□□□ 0.64
SHKBP1-223ENST00000600552 PATJQ8NI35 1801 aa19.02■□□□□ 0.63
SHKBP1-223ENST00000600552 TCHHQ07283 1943 aa19.02■□□□□ 0.63
SHKBP1-223ENST00000600552 FANCMQ8IYD8 2048 aa19.01■□□□□ 0.63
SHKBP1-223ENST00000600552 NCANO14594 1321 aa19.01■□□□□ 0.63
SHKBP1-223ENST00000600552 MYMKA6NI61 221 aa19.01■□□□□ 0.63
SHKBP1-223ENST00000600552 SHISA7A6NL88 538 aa19.01■□□□□ 0.63
SHKBP1-223ENST00000600552 SLC38A8A6NNN8 435 aa19.01■□□□□ 0.63
SHKBP1-223ENST00000600552 ADRB2P07550 413 aa19.01■□□□□ 0.63
SHKBP1-223ENST00000600552 PDCP20941 246 aa19.01■□□□□ 0.63
SHKBP1-223ENST00000600552 TXLNAP40222 546 aa19.01■□□□□ 0.63
SHKBP1-223ENST00000600552 SOX9P48436 509 aa19.01■□□□□ 0.63
SHKBP1-223ENST00000600552 TAF6P49848 677 aa19.01■□□□□ 0.63
SHKBP1-223ENST00000600552 WSCD1Q658N2 575 aa19.01■□□□□ 0.63
SHKBP1-223ENST00000600552 SV2BQ7L1I2 683 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms