RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	LILRA6	Q6PI73	481 aa		13.72	□□□□□ -0.21
UPF1-208	ENST00000600012	GLYCTK	Q8IVS8	523 aa		13.72	□□□□□ -0.21
UPF1-208	ENST00000600012	KCNN1	Q92952	543 aa		13.72	□□□□□ -0.21
UPF1-208	ENST00000600012	BICD1	Q96G01	975 aa		13.72	□□□□□ -0.21
UPF1-208	ENST00000600012	CEP63	Q96MT8	703 aa		13.72	□□□□□ -0.21
UPF1-208	ENST00000600012	CBWD1	Q9BRT8	395 aa		13.72	□□□□□ -0.21
UPF1-208	ENST00000600012	C2orf40	Q9H1Z8	148 aa		13.72	□□□□□ -0.21
UPF1-208	ENST00000600012	TMEM134	Q9H6X4	195 aa		13.72	□□□□□ -0.21
UPF1-208	ENST00000600012	KLK14	Q9P0G3	267 aa		13.72	□□□□□ -0.21
UPF1-208	ENST00000600012	LIMA1	Q9UHB6	759 aa	Known RBP	13.72	□□□□□ -0.21
UPF1-208	ENST00000600012	MYO15A	Q9UKN7	3530 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	VWA8	A3KMH1	1905 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	KRBA1	A5PL33	1030 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	HNRNPDL	O14979	420 aa	Known RBP	13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	PRKCB	P05771	671 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	LAMP2	P13473	410 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	RPL17	P18621	184 aa	Known RBP	13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	ABCD1	P33897	745 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	MTIF2	P46199	727 aa	Known RBP	13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	CASP4	P49662	377 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	COPB1	P53618	953 aa	Known RBP	13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	UBASH3A	P57075	661 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	FOXK2	Q01167	660 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	NFIL3	Q16649	462 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	FAM187B	Q17R55	369 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	RTP2	Q5QGT7	225 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	CEP135	Q66GS9	1140 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	ARMCX5	Q6P1M9	558 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	GET4	Q7L5D6	327 aa	Predicted RBP	13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	FILIP1	Q7Z7B0	1213 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	GOLGA5	Q8TBA6	731 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	RABGGTA	Q92696	567 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	NAP1L5	Q96NT1	182 aa	Predicted RBP	13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	VPS16	Q9H269	839 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	PCIF1	Q9H4Z3	704 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	TBC1D17	Q9HA65	648 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	INTS13	Q9NVM9	706 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	FBXW11	Q9UKB1	542 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	CA14	Q9ULX7	337 aa		13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	13.71	□□□□□ -0.21
UPF1-208	ENST00000600012	FANCM	Q8IYD8	2048 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	TTLL13P	A6NNM8	815 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	ANHX	E9PGG2	379 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	N4BP3	O15049	544 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	CBFA2T2	O43439	604 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	AKAP3	O75969	853 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	SCP2	P22307	547 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	RPL13	P26373	211 aa	Known RBP	13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	LIG4	P49917	911 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	EFNA5	P52803	228 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	ELAVL2	Q12926	359 aa	Known RBP	13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	HTR4	Q13639	388 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	MAPK6	Q16659	721 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	LIN9	Q5TKA1	542 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	PRSS55	Q6UWB4	352 aa	Predicted RBP	13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	C12orf56	Q8IXR9	622 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	ZSWIM2	Q8NEG5	633 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	ANKRD20A12P	Q8NF67	263 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	PIK3R5	Q8WYR1	880 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	PAAF1	Q9BRP4	392 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	TTPAL	Q9BTX7	342 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	TARS2	Q9BW92	718 aa	Known RBP	13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	FZD8	Q9H461	694 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	SLC2A4RG	Q9NR83	387 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	DMAC2	Q9NW81	257 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	HSPBP1	Q9NZL4	362 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	TRIP11	Q15643	1979 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	MIA3	Q5JRA6	1907 aa		13.7	□□□□□ -0.22
UPF1-208	ENST00000600012	EP300	Q09472	2414 aa	Predicted RBP	13.7	□□□□□ -0.22
UPF1-208	ENST00000600012		A0A1B0GTH6	734 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	GOLGA8IP	A6NC78	632 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	CASTOR2	A6NHX0	329 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	GOLGA8J	A6NMD2	632 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	EXOC3	O60645	756 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	PIGR	P01833	764 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	TH	P07101	528 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	HNRNPA1	P09651	372 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	PRKCSH	P14314	528 aa	Predicted RBP	13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	FSHR	P23945	695 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	ADSS	P30520	456 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	CCDC173	Q0VFZ6	552 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	PRPF4B	Q13523	1007 aa	Known RBP	13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	PSMD5	Q16401	504 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	TMEM132A	Q24JP5	1023 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	FAM171A1	Q5VUB5	890 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	PHLDB3	Q6NSJ2	640 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	PDXDC1	Q6P996	788 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	SLC9A9	Q8IVB4	645 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	GPR152	Q8TDT2	470 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	HASPIN	Q8TF76	798 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	POMGNT1	Q8WZA1	660 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	SAAL1	Q96ER3	474 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	MRFAP1L1	Q96HT8	127 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	ZBTB45	Q96K62	511 aa	Predicted RBP	13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	ADPGK	Q9BRR6	497 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	TUBGCP2	Q9BSJ2	902 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	MRPL4	Q9BYD3	311 aa	Known RBP	13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	SEMA4A	Q9H3S1	761 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	PDZD7	Q9H5P4	517 aa		13.69	□□□□□ -0.22
UPF1-208	ENST00000600012	ARHGEF3	Q9NR81	526 aa		13.69	□□□□□ -0.22

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