RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 SLITRK6Q9H5Y7 841 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 POLR3BQ9NW08 1133 aaPredicted RBP9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 SLC27A5Q9Y2P5 690 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 YIPF1Q9Y548 306 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 PHLPP2Q6ZVD8 1323 aa9.45□□□□□ -0.9
SHKBP1-220ENST00000599716 MYH11P35749 1972 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 RALGAPA1Q6GYQ0 2036 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 NCAM2O15394 837 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 HRO43593 1189 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 CHRNB1P11230 501 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 PSMC3P17980 439 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 PROZP22891 400 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 RPS9P46781 194 aaKnown RBP9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 PXNP49023 591 aaPredicted RBP9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 DUSP4Q13115 394 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 PTGDRQ13258 359 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 GNL2Q13823 731 aaKnown RBP9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 SLC10A6Q3KNW5 377 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 CYP4A22Q5TCH4 519 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 HAUS3Q68CZ6 603 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 RINT1Q6NUQ1 792 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 MPZL3Q6UWV2 235 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 DNASE1L2Q92874 299 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 SUSD3Q96L08 255 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 MMTAG2Q9BU76 263 aaKnown RBP9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 SMG9Q9H0W8 520 aaKnown RBP9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 DNAJC25Q9H1X3 360 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 AVENQ9NQS1 362 aaPredicted RBP9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 TOPORSQ9NS56 1045 aaPredicted RBP9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 CNTN3Q9P232 1028 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 ARHGAP28Q9P2N2 729 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 AFF4Q9UHB7 1163 aaKnown RBP9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 ASXL3Q9C0F0 2248 aa9.44□□□□□ -0.9
SHKBP1-220ENST00000599716 H7C4K7 107 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 ARNTLO00327 626 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 ZNF263O14978 683 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 SYN3O14994 580 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 FOXD2O60548 495 aaPredicted RBP9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 MCF2P10911 925 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 KCNE1P15382 129 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 MATR3P43243 847 aaKnown RBP eCLIP9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 TNK2Q07912 1038 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 DMP1Q13316 513 aaPredicted RBP9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 IL31Q6EBC2 164 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 IQCEQ6IPM2 695 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 ZNF280DQ6N043 979 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 PKN3Q6P5Z2 889 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 C1orf186Q6ZWK4 172 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 TMC8Q8IU68 726 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 ELMOD1Q8N336 334 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 IGSF22Q8N9C0 903 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 ATAD1Q8NBU5 361 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 STKLD1Q8NE28 680 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 IRF7Q92985 503 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 ZNF512Q96ME7 567 aaPredicted RBP9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 NELL2Q99435 816 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 TMEM121BQ9BXQ6 578 aaPredicted RBP9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 LRRC3Q9BY71 257 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 ASAH2Q9NR71 780 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 SLC38A7Q9NVC3 462 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 GTSE1Q9NYZ3 720 aa9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 MRPS17Q9Y2R5 130 aaKnown RBP9.43□□□□□ -0.9
SHKBP1-220ENST00000599716 MAN2B1O00754 1011 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 ZNF197O14709 1029 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 PRAMEF12O95522 483 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 PRR29P0C7W0 189 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 MARCKSP29966 332 aaPredicted RBP9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 MAGEA9P43362 315 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 CXCL12P48061 93 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 KPNA1P52294 538 aaPredicted RBP9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 CYP4F8P98187 520 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 YWHAHQ04917 246 aaPredicted RBP9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 SIM2Q14190 667 aaPredicted RBP9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 NOLC1Q14978 699 aaKnown RBP eCLIP9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 PON2Q15165 354 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 TPGS2Q68CL5 300 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 GAREM2Q75VX8 874 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 APBB1IPQ7Z5R6 666 aaPredicted RBP9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 ARID3BQ8IVW6 561 aaPredicted RBP9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 FBXO18Q8NFZ0 1043 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 LRRC15Q8TF66 581 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 FAM212AQ96EL1 285 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 PNMA5Q96PV4 448 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 LPIN3Q9BQK8 851 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 MKNK1Q9BUB5 465 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 IKZF4Q9H2S9 585 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 FOXP1Q9H334 677 aaPredicted RBP9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 SMOC1Q9H4F8 434 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 TMEM134Q9H6X4 195 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 PCDHB8Q9UN66 801 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 DNM3Q9UQ16 869 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 ACACAQ13085 2346 aa9.42□□□□□ -0.9
SHKBP1-220ENST00000599716 TSC2P49815 1807 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 LACTBL1A8MY62 500 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 TISP43B9A030 160 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 K7ESF4 209 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 EXTL3O43909 919 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 MAPTP10636 758 aaKnown RBP9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 RPL9P32969 192 aaKnown RBP9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 CCR3P51677 355 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms