RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 GDAP2Q9NXN4 497 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 DSEQ9UL01 958 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 MAFFQ9ULX9 164 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 NR2E1Q9Y466 385 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 TIMM13Q9Y5L4 95 aaPredicted RBP17.41■□□□□ 0.38
TRIM28-213ENST00000598355 DENND4CQ5VZ89 1909 aa17.41■□□□□ 0.38
TRIM28-213ENST00000598355 SPDYE4A6NLX3 237 aa17.4■□□□□ 0.38
TRIM28-213ENST00000598355 KPNA7A9QM74 516 aa17.4■□□□□ 0.38
TRIM28-213ENST00000598355 C2CD4DB7Z1M9 353 aa17.4■□□□□ 0.38
TRIM28-213ENST00000598355 PRPF40AO75400 957 aaKnown RBP17.4■□□□□ 0.38
TRIM28-213ENST00000598355 KIF20AO95235 890 aa17.4■□□□□ 0.38
TRIM28-213ENST00000598355 VNN2O95498 520 aa17.4■□□□□ 0.38
TRIM28-213ENST00000598355 TMEM191BP0C7N4 346 aa17.4■□□□□ 0.38
TRIM28-213ENST00000598355 LMBRD2Q68DH5 695 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-213ENST00000598355 LIMS2Q7Z4I7 341 aa17.4■□□□□ 0.38
TRIM28-213ENST00000598355 ZDHHC14Q8IZN3 488 aa17.4■□□□□ 0.38
TRIM28-213ENST00000598355 PLEKHO2Q8TD55 490 aa17.4■□□□□ 0.38
TRIM28-213ENST00000598355 ANKRD36BP1Q96IX9 119 aa17.4■□□□□ 0.38
TRIM28-213ENST00000598355 RPGRIP1Q96KN7 1286 aa17.4■□□□□ 0.38
TRIM28-213ENST00000598355 RTP3Q9BQQ7 232 aa17.4■□□□□ 0.38
TRIM28-213ENST00000598355 AFF4Q9UHB7 1163 aaKnown RBP17.4■□□□□ 0.38
TRIM28-213ENST00000598355 MAPK13O15264 365 aa17.39■□□□□ 0.37
TRIM28-213ENST00000598355 EXOC3O60645 756 aa17.39■□□□□ 0.37
TRIM28-213ENST00000598355 N4BP1O75113 896 aaKnown RBP17.39■□□□□ 0.37
TRIM28-213ENST00000598355 GADD45BO75293 160 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-213ENST00000598355 NR3C1P04150 777 aa17.39■□□□□ 0.37
TRIM28-213ENST00000598355 MCCD1P59942 119 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-213ENST00000598355 DUOXA2Q1HG44 320 aa17.39■□□□□ 0.37
TRIM28-213ENST00000598355 PPM1LQ5SGD2 360 aa17.39■□□□□ 0.37
TRIM28-213ENST00000598355 CLEC17AQ6ZS10 378 aa17.39■□□□□ 0.37
TRIM28-213ENST00000598355 USP37Q86T82 979 aa17.39■□□□□ 0.37
TRIM28-213ENST00000598355 OR10T2Q8NGX3 314 aa17.39■□□□□ 0.37
TRIM28-213ENST00000598355 SPATA18Q8TC71 538 aa17.39■□□□□ 0.37
TRIM28-213ENST00000598355 NOC3LQ8WTT2 800 aaKnown RBP17.39■□□□□ 0.37
TRIM28-213ENST00000598355 AGAP1Q9UPQ3 857 aa17.39■□□□□ 0.37
TRIM28-213ENST00000598355 OBSL1O75147 1896 aa17.39■□□□□ 0.37
TRIM28-213ENST00000598355 CYB561D2O14569 222 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 DCXO43602 365 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 SEC24AO95486 1093 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 RBP5P82980 135 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 GPR17Q13304 367 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 RNF19BQ6ZMZ0 732 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 TRAPPC11Q7Z392 1133 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 CSGALNACT2Q8N6G5 542 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 TDRD5Q8NAT2 981 aaKnown RBP17.38■□□□□ 0.37
TRIM28-213ENST00000598355 RDH13Q8NBN7 331 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 PARD3BQ8TEW8 1205 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 ZNF516Q92618 1163 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 EPHX3Q9H6B9 360 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 C11orf16Q9NQ32 467 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 AVENQ9NQS1 362 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-213ENST00000598355 RMND1Q9NWS8 449 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 PCDHA5Q9Y5H7 936 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 INSL5Q9Y5Q6 135 aa17.38■□□□□ 0.37
TRIM28-213ENST00000598355 GREB1Q4ZG55 1949 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 XYLBO75191 536 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 STAU1O95793 577 aaKnown RBP17.37■□□□□ 0.37
TRIM28-213ENST00000598355 TNNC2P02585 160 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 CPB1P15086 417 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 CASP4P49662 377 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 ENPEPQ07075 957 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 EDRF1Q3B7T1 1238 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 ZNF658Q5TYW1 1059 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-213ENST00000598355 WSCD1Q658N2 575 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 OTOP3Q7RTS5 596 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 PDCL2Q8N4E4 241 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 FNBP1Q96RU3 617 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 TMEM209Q96SK2 561 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 ZCWPW1Q9H0M4 648 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 HSFX1Q9UBD0 423 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 MUTYHQ9UIF7 546 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 L1RE1Q9UN81 338 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 ZNF318Q5VUA4 2279 aa17.37■□□□□ 0.37
TRIM28-213ENST00000598355 MTMR11A4FU01 709 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 LRRIQ3A6PVS8 624 aaPredicted RBP17.36■□□□□ 0.37
TRIM28-213ENST00000598355 GABRDO14764 452 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 CCL16O15467 120 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 CALUO43852 315 aaPredicted RBP17.36■□□□□ 0.37
TRIM28-213ENST00000598355 KINO60870 393 aaKnown RBP17.36■□□□□ 0.37
TRIM28-213ENST00000598355 SMC2O95347 1197 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 OR4Q2P0C623 313 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 DLATP10515 647 aaKnown RBP17.36■□□□□ 0.37
TRIM28-213ENST00000598355 ALADP13716 330 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 SP100P23497 879 aaPredicted RBP17.36■□□□□ 0.37
TRIM28-213ENST00000598355 UBE2HP62256 183 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 ADCY1Q08828 1119 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 ZC3H3Q8IXZ2 948 aaKnown RBP17.36■□□□□ 0.37
TRIM28-213ENST00000598355 SMYD4Q8IYR2 804 aaPredicted RBP17.36■□□□□ 0.37
TRIM28-213ENST00000598355 TMEM86AQ8N2M4 240 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 PLCD3Q8N3E9 789 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 TOP6BLQ8N6T0 577 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 TMC2Q8TDI7 906 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 CCDC127Q96BQ5 260 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 GTPBP4Q9BZE4 634 aaKnown RBP17.36■□□□□ 0.37
TRIM28-213ENST00000598355 CRISPLD1Q9H336 500 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 VRTNQ9H8Y1 702 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 EPS15L1Q9UBC2 864 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 HOOK1Q9UJC3 728 aaKnown RBP17.36■□□□□ 0.37
TRIM28-213ENST00000598355 MAPK8IP1Q9UQF2 711 aa17.36■□□□□ 0.37
TRIM28-213ENST00000598355 NUP210Q8TEM1 1887 aaPredicted RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms