RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 SLC22A17Q8WUG5 538 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 TMEM209Q96SK2 561 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 PKMYT1Q99640 499 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 MRPL45Q9BRJ2 306 aaKnown RBP11.37□□□□□ -0.59
LIG1-210ENST00000596332 TUBGCP2Q9BSJ2 902 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 TTPALQ9BTX7 342 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 BCO2Q9BYV7 579 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 SIX2Q9NPC8 291 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 RAB20Q9NX57 234 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 FNIP2Q9P278 1114 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 MTRRQ9UBK8 725 aa11.37□□□□□ -0.59
LIG1-210ENST00000596332 PRRC2BQ5JSZ5 2229 aaKnown RBP11.37□□□□□ -0.59
LIG1-210ENST00000596332 SPTBN5Q9NRC6 3674 aaKnown RBP11.37□□□□□ -0.59
LIG1-210ENST00000596332 PER2O15055 1255 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 TEX28O15482 410 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 CLASP2O75122 1294 aaKnown RBP11.36□□□□□ -0.59
LIG1-210ENST00000596332 FGFR1OPO95684 399 aaKnown RBP11.36□□□□□ -0.59
LIG1-210ENST00000596332 KRT19P08727 400 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 LMO2P25791 158 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 EEF1GP26641 437 aaKnown RBP11.36□□□□□ -0.59
LIG1-210ENST00000596332 LTBRP36941 435 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 PNPLA4P41247 253 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 ASPAP45381 313 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 GLUD2P49448 558 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 CDH8P55286 799 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 CCDC142Q17RM4 750 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 CTC1Q2NKJ3 1217 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 SGSM1Q2NKQ1 1148 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 WDR72Q3MJ13 1102 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 TCEAL5Q5H9L2 206 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 DCAF17Q5H9S7 520 aaPredicted RBP11.36□□□□□ -0.59
LIG1-210ENST00000596332 PLPP4Q5VZY2 271 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 SLC8B1Q6J4K2 584 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 PHLDB3Q6NSJ2 640 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 DPH6Q7L8W6 267 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 TMC7Q7Z402 723 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 CEP57Q86XR8 500 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 EHBP1Q8NDI1 1231 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 FBXL13Q8NEE6 735 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 OR10T2Q8NGX3 314 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 WHAMMQ8TF30 809 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 RIN2Q8WYP3 895 aaPredicted RBP11.36□□□□□ -0.59
LIG1-210ENST00000596332 NAP1L5Q96NT1 182 aaPredicted RBP11.36□□□□□ -0.59
LIG1-210ENST00000596332 LPIN3Q9BQK8 851 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 NDST4Q9H3R1 872 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 MMRN2Q9H8L6 949 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 NGRNQ9NPE2 291 aaKnown RBP11.36□□□□□ -0.59
LIG1-210ENST00000596332 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.36□□□□□ -0.593e-6■■■■■ 37.3
LIG1-210ENST00000596332 PUF60Q9UHX1 559 aaKnown RBP11.36□□□□□ -0.59
LIG1-210ENST00000596332 FBXL5Q9UKA1 691 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.36□□□□□ -0.59
LIG1-210ENST00000596332 SNX9Q9Y5X1 595 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 BACE2Q9Y5Z0 518 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 TSC2P49815 1807 aa11.36□□□□□ -0.59
LIG1-210ENST00000596332 TULP1O00294 542 aaPredicted RBP11.35□□□□□ -0.59
LIG1-210ENST00000596332 C2CD2LO14523 706 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 P4HA2O15460 535 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 LINC01565O15544 149 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 AP5Z1O43299 807 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 TRAPPC3O43617 180 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 TACC1O75410 805 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 ABLIM3O94929 683 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 CSPG5O95196 566 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 PAPLNO95428 1278 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 GLP2RO95838 553 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 AFPP02771 609 aaKnown RBP11.35□□□□□ -0.59
LIG1-210ENST00000596332 FAM163BP0C2L3 166 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 SLC9A1P19634 815 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 MXI1P50539 228 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 CLCN4P51793 760 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 ELAVL2Q12926 359 aaKnown RBP11.35□□□□□ -0.59
LIG1-210ENST00000596332 ADAM15Q13444 863 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 BIRC3Q13489 604 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 SMC1AQ14683 1233 aaKnown RBP11.35□□□□□ -0.59
LIG1-210ENST00000596332 MAN2A1Q16706 1144 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 DUSP6Q16828 381 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 SV2CQ496J9 727 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 VWA3BQ502W6 1294 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 TCERG1LQ5VWI1 586 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 PDE12Q6L8Q7 609 aaKnown RBP11.35□□□□□ -0.59
LIG1-210ENST00000596332 DSTYKQ6XUX3 929 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 ARHGEF19Q8IW93 802 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 TOP6BLQ8N6T0 577 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 FAM200AQ8TCP9 573 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 TAF4BQ92750 862 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 KAT5Q92993 513 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 ARID3AQ99856 593 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 SMYD3Q9H7B4 428 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 TMLHEQ9NVH6 421 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 TAB2Q9NYJ8 693 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 STK39Q9UEW8 545 aa11.35□□□□□ -0.59
LIG1-210ENST00000596332 AJAP1Q9UKB5 411 aaPredicted RBP11.35□□□□□ -0.59
LIG1-210ENST00000596332 MYO9BQ13459 2157 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 XIRP2A4UGR9 3374 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.34□□□□□ -0.59
LIG1-210ENST00000596332 GTPBP10A4D1E9 387 aaKnown RBP11.34□□□□□ -0.59
LIG1-210ENST00000596332 STX10O60499 249 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 PHACTR2O75167 634 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 ATP2C2O75185 946 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 NOL4O94818 638 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms