RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 SORCS3Q9UPU3 1222 aa17.49■□□□□ 0.39
TRIM28-206ENST00000595974 FAM86C2PA6NEL3 165 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 PRR33A8MZF0 331 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 KPNA7A9QM74 516 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 TULP1O00294 542 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-206ENST00000595974 CYB561D2O14569 222 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 KIF20AO95235 890 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 LRG1P02750 347 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 GBP2P32456 591 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-206ENST00000595974 ZXDAP98168 799 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 GRASPQ7Z6J2 395 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-206ENST00000595974 METTL23Q86XA0 190 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 WDR49Q8IV35 697 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 LRFN3Q9BTN0 628 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 CYP4F11Q9HBI6 524 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.48■□□□□ 0.39
TRIM28-206ENST00000595974 EPS15L1Q9UBC2 864 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 POLIQ9UNA4 740 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 AGAP1Q9UPQ3 857 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 INSL5Q9Y5Q6 135 aa17.48■□□□□ 0.39
TRIM28-206ENST00000595974 N4BP1O75113 896 aaKnown RBP17.47■□□□□ 0.39
TRIM28-206ENST00000595974 PRPF40AO75400 957 aaKnown RBP17.47■□□□□ 0.39
TRIM28-206ENST00000595974 TNNC2P02585 160 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 FSHRP23945 695 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 RBP5P82980 135 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 CYP24A1Q07973 514 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 ADCY1Q08828 1119 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 GPR17Q13304 367 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 MTMR3Q13615 1198 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 KCNB1Q14721 858 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 PSMD6Q15008 389 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 DUOXA2Q1HG44 320 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 RNF19BQ6ZMZ0 732 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 GET4Q7L5D6 327 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-206ENST00000595974 FMR1NBQ8N0W7 255 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-206ENST00000595974 CSGALNACT2Q8N6G5 542 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 CXorf38Q8TB03 319 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 TMEM174Q8WUU8 243 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 BORCS6Q96GS4 357 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 CGRRF1Q99675 332 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 KCTD10Q9H3F6 313 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 LIMD1Q9UGP4 676 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 SIX4Q9UIU6 781 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 ZFP37Q9Y6Q3 630 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-206ENST00000595974 PTPRJQ12913 1337 aa17.47■□□□□ 0.39
TRIM28-206ENST00000595974 ZNF318Q5VUA4 2279 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 PDXKO00764 312 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 EXOC3O60645 756 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 SEC24AO95486 1093 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 KRT19P08727 400 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 FAM160A1Q05DH4 1040 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 SIGLEC14Q08ET2 396 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 BFSP1Q12934 665 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 LMBRD2Q68DH5 695 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-206ENST00000595974 SLC9A9Q8IVB4 645 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 UBALD2Q8IYN6 164 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 RDH13Q8NBN7 331 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 OR5B17Q8NGF7 314 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 FNBP1Q96RU3 617 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 MYADMQ96S97 322 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 R3HCC1Q9Y3T6 440 aaKnown RBP17.46■□□□□ 0.39
TRIM28-206ENST00000595974 ZDBF2Q9HCK1 2354 aa17.46■□□□□ 0.39
TRIM28-206ENST00000595974 ASGR2P07307 311 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 OR4Q2P0C623 313 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 DLATP10515 647 aaKnown RBP17.45■□□□□ 0.38
TRIM28-206ENST00000595974 NTHL1P78549 312 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 PABPC1LQ4VXU2 614 aaKnown RBP17.45■□□□□ 0.38
TRIM28-206ENST00000595974 WSCD1Q658N2 575 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 TRIM67Q6ZTA4 783 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 THEM5Q8N1Q8 247 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 ELMOD1Q8N336 334 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 ENGASEQ8NFI3 743 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 OR10T2Q8NGX3 314 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 SPATA18Q8TC71 538 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 FAM84AQ96KN4 292 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 AVENQ9NQS1 362 aaPredicted RBP17.45■□□□□ 0.38
TRIM28-206ENST00000595974 HCFC1R1Q9NWW0 138 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 GDAP2Q9NXN4 497 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 IGSF9Q9P2J2 1179 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 DNMT3BQ9UBC3 853 aaKnown RBP17.45■□□□□ 0.38
TRIM28-206ENST00000595974 YIPF1Q9Y548 306 aa17.45■□□□□ 0.38
TRIM28-206ENST00000595974 MTMR11A4FU01 709 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 HUS1O60921 280 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 TNNI1P19237 187 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 SMARCB1Q12824 385 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 MYO1EQ12965 1108 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 PLD1Q13393 1074 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 SNW1Q13573 536 aaKnown RBP17.44■□□□□ 0.38
TRIM28-206ENST00000595974 TMEM86AQ8N2M4 240 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 GUF1Q8N442 669 aaKnown RBP17.44■□□□□ 0.38
TRIM28-206ENST00000595974 NXPE3Q969Y0 559 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 MFSD14AQ96MC6 490 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 PGLYRP2Q96PD5 576 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 RTP3Q9BQQ7 232 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 DMAC2Q9NW81 257 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 HSFX1Q9UBD0 423 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 CDH7Q9ULB5 785 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 L1RE1Q9UN81 338 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 TRAF3IP3Q9Y228 551 aa17.44■□□□□ 0.38
TRIM28-206ENST00000595974 TMEM221A6NGB7 291 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms