RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 DDX3XO00571 662 aaKnown RBP eCLIP15.76■□□□□ 0.115e-8■■■■■ 77.1
SHKBP1-211ENST00000595945 EFCAB14O75071 495 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 CILPO75339 1184 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 FAM163BP0C2L3 166 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 KRT5P13647 590 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 CYP11B1P15538 503 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 CHRNB2P17787 502 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 IGFBP6P24592 240 aaPredicted RBP15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 USP8P40818 1118 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 CLCNKBP51801 687 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 CDH8P55286 799 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 TNNC1P63316 161 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 TMEM270Q6UE05 265 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 SLC47A2Q86VL8 602 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 COLGALT2Q8IYK4 626 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 CCAR2Q8N163 923 aaKnown RBP15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 C17orf53Q8N3J3 647 aaPredicted RBP15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 C3orf58Q8NDZ4 430 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 ACRBPQ8NEB7 543 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 LNX1Q8TBB1 728 aaPredicted RBP15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 WHAMMQ8TF30 809 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 AGPAT1Q99943 283 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 DESI2Q9BSY9 194 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 SPTLC3Q9NUV7 552 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 TBC1D13Q9NVG8 400 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 CACNG4Q9UBN1 327 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 LRFN2Q9ULH4 789 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 PPP2R2CQ9Y2T4 447 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 SNX9Q9Y5X1 595 aa15.76■□□□□ 0.11
SHKBP1-211ENST00000595945 KIAA1671Q9BY89 1806 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 A0A087X0T9 212 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 CASTOR2A6NHX0 329 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 AKR1B10O60218 316 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 TACC1O75410 805 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 DDHD2O94830 711 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 CLSTN1O94985 981 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 FAM228BP0C875 321 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 CD58P19256 250 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 PAX3P23760 479 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 GATMP50440 423 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 PPIGQ13427 754 aaKnown RBP eCLIP15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 BMS1Q14692 1282 aaKnown RBP15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 SLC18A3Q16572 532 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 SOWAHAQ2M3V2 549 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 C16orf59Q7L2K0 433 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 ZNF677Q86XU0 584 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 ZNF280BQ86YH2 543 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 REXO1L1PQ8IX06 675 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 MRPL45Q9BRJ2 306 aaKnown RBP15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 PAAF1Q9BRP4 392 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 ELOVL4Q9GZR5 314 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 DEF6Q9H4E7 631 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 ACP6Q9NPH0 428 aa15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 BARX2Q9UMQ3 279 aaPredicted RBP15.75■□□□□ 0.11
SHKBP1-211ENST00000595945 USP27XA6NNY8 438 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 TMEM189-UBE2V1I3L0A0 370 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 BAIAP3O94812 1187 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 PAEPP09466 180 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 PDE6CP51160 858 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 RAD23BP54727 409 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 FMO1Q01740 532 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 CDR2Q01850 454 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 GFPT1Q06210 699 aaPredicted RBP15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 DCLRE1AQ6PJP8 1040 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 DPH6Q7L8W6 267 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 GLYCTKQ8IVS8 523 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 TOP6BLQ8N6T0 577 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 SLC4A11Q8NBS3 891 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 KBTBD7Q8WVZ9 684 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 TWNKQ96RR1 684 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 HMGXB4Q9UGU5 601 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 ADAMTS1Q9UHI8 967 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 L1RE1Q9UN81 338 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 NME7Q9Y5B8 376 aa15.74■□□□□ 0.11
SHKBP1-211ENST00000595945 ATP8B3O60423 1300 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 PTPRDP23468 1912 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 ZSCAN12O43309 604 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 ZNF500O60304 480 aaPredicted RBP15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 CALCAP01258 141 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 CCDC175P0C221 793 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 ACRP10323 421 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 TNFAIP3P21580 790 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 WARSP23381 471 aaKnown RBP15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 MSNP26038 577 aaKnown RBP15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 NDST1P52848 882 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 WDR5P61964 334 aaKnown RBP15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 KRT83P78385 493 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 CYP27A1Q02318 531 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 ZNF662Q6ZS27 426 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 VPS36Q86VN1 386 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 UNC93AQ86WB7 457 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 PALB2Q86YC2 1186 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 C7orf61Q8IZ16 206 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 ABI1Q8IZP0 508 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 BADQ92934 168 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 TOP1MTQ969P6 601 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 ABHD8Q96I13 439 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 PPP1R13BQ96KQ4 1090 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 SENP8Q96LD8 212 aa15.73■□□□□ 0.11
SHKBP1-211ENST00000595945 MMS19Q96T76 1030 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms