RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 B3GALT6Q96L58 329 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 ZNF560Q96MR9 790 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 GTPBP4Q9BZE4 634 aaKnown RBP11.36□□□□□ -0.59
LIG3-212ENST00000590181 HAPLN2Q9GZV7 340 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 ARHGEF3Q9NR81 526 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 WNT16Q9UBV4 365 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 PCDHA7Q9UN72 937 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 ASB3Q9Y575 518 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 TPRP12270 2363 aaKnown RBP11.36□□□□□ -0.59
LIG3-212ENST00000590181 GPR179Q6PRD1 2367 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 CACNA1IQ9P0X4 2223 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 ANKRD63C9JTQ0 380 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 PRRG1O14668 218 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 POLR2DO15514 142 aaKnown RBP11.35□□□□□ -0.59
LIG3-212ENST00000590181 LRG1P02750 347 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 DCNP07585 359 aaKnown RBP11.35□□□□□ -0.59
LIG3-212ENST00000590181 MYBP10242 640 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 LAMP2P13473 410 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 RPL17P18621 184 aaKnown RBP11.35□□□□□ -0.59
LIG3-212ENST00000590181 FSHRP23945 695 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 ROR1Q01973 937 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 GPR17Q13304 367 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 PUM1Q14671 1186 aaKnown RBP eCLIP11.35□□□□□ -0.59
LIG3-212ENST00000590181 SV2CQ496J9 727 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 JADE1Q6IE81 842 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 IQCEQ6IPM2 695 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 SLC39A4Q6P5W5 647 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 UNC13DQ70J99 1090 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 GET4Q7L5D6 327 aaPredicted RBP11.35□□□□□ -0.59
LIG3-212ENST00000590181 DPH6Q7L8W6 267 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 HS2ST1Q7LGA3 356 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 THEM5Q8N1Q8 247 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 LRRC52Q8N7C0 313 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 GPR152Q8TDT2 470 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 RUBCNQ92622 972 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 CCDC47Q96A33 483 aaKnown RBP11.35□□□□□ -0.59
LIG3-212ENST00000590181 E2F7Q96AV8 911 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 MYADMQ96S97 322 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 PANK2Q9BZ23 570 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 CXCL16Q9H2A7 254 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 GOLGA2P5Q9HBQ8 144 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 DPP3Q9NY33 737 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 FBXL5Q9UKA1 691 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 ITGA11Q9UKX5 1188 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 CDH7Q9ULB5 785 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 ANK1P16157 1881 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 MAP1BP46821 2468 aaKnown RBP11.35□□□□□ -0.59
LIG3-212ENST00000590181 USP24Q9UPU5 2620 aa11.35□□□□□ -0.59
LIG3-212ENST00000590181 A0A087X0B3 334 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 ZNF233A6NK53 670 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 ANHXE9PGG2 379 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 RFPL2O75678 378 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 SPATA31D3P0C874 917 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 SP9P0CG40 484 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 ADSSP30520 456 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 TNFSF9P41273 254 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 BRCC3P46736 316 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 TUFMP49411 452 aaKnown RBP11.34□□□□□ -0.59
LIG3-212ENST00000590181 ACOT2P49753 483 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 TAF6P49848 677 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 ASIC1P78348 528 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 NUCB2P80303 420 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 MYO1EQ12965 1108 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 PABPC1LQ4VXU2 614 aaKnown RBP11.34□□□□□ -0.59
LIG3-212ENST00000590181 FAM26FQ5R3K3 315 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 C9orf57Q5W0N0 161 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 OVOS1Q6IE37 1185 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 SPATA31D4Q6ZUB0 917 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 GLYCTKQ8IVS8 523 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 BRSK2Q8IWQ3 736 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 C12orf56Q8IXR9 622 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 TMEM86AQ8N2M4 240 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 GPD1LQ8N335 351 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 SLC7A14Q8TBB6 771 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 DHX58Q96C10 678 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 FAM212AQ96EL1 285 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 SHDQ96IW2 340 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 SPATA32Q96LK8 384 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 ZNF512Q96ME7 567 aaPredicted RBP11.34□□□□□ -0.59
LIG3-212ENST00000590181 FOXQ1Q9C009 403 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 DOCK6Q96HP0 2047 aa11.34□□□□□ -0.59
LIG3-212ENST00000590181 TCHHQ07283 1943 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 FAM237AA0A1B0GTK4 181 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 A0A1W2PQ27 194 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 A0A1W2PQ64 194 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 A0A1W2PQD8 194 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 SOBPA7XYQ1 873 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 KPNA7A9QM74 516 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 MEFVO15553 781 aaPredicted RBP11.33□□□□□ -0.6
LIG3-212ENST00000590181 AP3M2P53677 418 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 RBP5P82980 135 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 PFKPQ01813 784 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 DNM1Q05193 864 aaKnown RBP11.33□□□□□ -0.6
LIG3-212ENST00000590181 EHHADHQ08426 723 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 HTR4Q13639 388 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 DUOXA2Q1HG44 320 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 BMT2Q1RMZ1 405 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 SEZ6Q53EL9 994 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 CYP4A22Q5TCH4 519 aa11.33□□□□□ -0.6
LIG3-212ENST00000590181 PHLDB3Q6NSJ2 640 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms