RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 Q6ZVL8 140 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 GDF7Q7Z4P5 450 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 DAAM2Q86T65 1068 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 PQLC1Q8N2U9 271 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 MSL3Q8N5Y2 521 aaKnown RBP4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 OR2I1PQ8NGU4 316 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 KAT5Q92993 513 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 FCRL4Q96PJ5 515 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 CDC5LQ99459 802 aaKnown RBP4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 CPPED1Q9BRF8 314 aaPredicted RBP4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 SENP6Q9GZR1 1112 aaPredicted RBP4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 MOCS1Q9NZB8 636 aa4.69□□□□□ -1.66
SMCHD1-209ENST00000583441 CAPN8A6NHC0 703 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 PROP1O75360 226 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 GPR32O75388 356 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 ITGA10O75578 1167 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 FTH1P19P0C7X4 201 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 APOBEC3AP31941 199 aaPredicted RBP4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 PTGER1P34995 402 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 SREBF1P36956 1147 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 AGFG1P52594 562 aaKnown RBP4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 HK3P52790 923 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 RHBDL3P58872 404 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 GPSM2P81274 684 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 DSC2Q02487 901 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 NOGQ13253 232 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 SP140Q13342 867 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 COBLL1Q53SF7 1204 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 CYB5RLQ6IPT4 315 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 DARS2Q6PI48 645 aaKnown RBP4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 GADL1Q6ZQY3 521 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 CCDC149Q6ZUS6 474 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 KIAA0319LQ8IZA0 1049 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 SVIPQ8NHG7 77 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 KLHDC4Q8TBB5 520 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 CLPTM1LQ96KA5 538 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 DCLRE1CQ96SD1 692 aaKnown RBP4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 CGRRF1Q99675 332 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 NDC1Q9BTX1 674 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 B3GNT5Q9BYG0 378 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 USP25Q9UHP3 1055 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 FEZ2Q9UHY8 353 aaPredicted RBP4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 PCDHB1Q9Y5F3 818 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 PCDHA13Q9Y5I0 950 aa4.68□□□□□ -1.66
SMCHD1-209ENST00000583441 UNC119BA6NIH7 251 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 ERVV-2B6SEH9 535 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 GOLIM4O00461 696 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 ADCY6O43306 1168 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 STC2O76061 302 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 ALDH2P05091 517 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 GUCY1A2P33402 732 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 SLC6A9P48067 706 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 MAP2K6P52564 334 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 BIRC2Q13490 618 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 GALEQ14376 348 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 SRSF7Q16629 238 aaKnown RBP eCLIP4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 BEAN1Q3B7T3 259 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 KIAA1614Q5VZ46 1190 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 TRMT2AQ8IZ69 625 aaKnown RBP4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 CMTM4Q8IZR5 234 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 SLC44A3Q8N4M1 653 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 CPEB3Q8NE35 698 aaKnown RBP4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 PPP1R35Q8TAP8 253 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 TMX3Q96JJ7 454 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 MRGPRX4Q96LA9 322 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 PSMD1Q99460 953 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 PDCD2LQ9BRP1 358 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 WACQ9BTA9 647 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 WDCPQ9H6R7 721 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 LMBRD1Q9NUN5 540 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 ING3Q9NXR8 418 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 DKK2Q9UBU2 259 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 L1RE1Q9UN81 338 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 SIK3Q9Y2K2 1263 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 NR2E3Q9Y5X4 410 aa4.67□□□□□ -1.66
SMCHD1-209ENST00000583441 A0A088AWK7 358 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 FRS3O43559 492 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 MGEA5O60502 916 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 PEX14O75381 377 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 IFIT2P09913 472 aaKnown RBP4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 DDCP20711 480 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 SMARCA1P28370 1054 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 PTPN7P35236 360 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 FLT3LGP49771 235 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 GZMKP49863 264 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 CTXN1P60606 82 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 TLE1Q04724 770 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 TARDBPQ13148 414 aaKnown RBP eCLIP4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 NPNTQ6UXI9 565 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 ZNF572Q7Z3I7 529 aaPredicted RBP4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 FAM156AQ8NDB6 213 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 IFI44Q8TCB0 444 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 CCHCR1Q8TD31 782 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 IL17RAQ96F46 866 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 VPS33BQ9H267 617 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 CNNM1Q9NRU3 951 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 GNL3LQ9NVN8 582 aaKnown RBP4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 AJAP1Q9UKB5 411 aaPredicted RBP4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 COMMD10Q9Y6G5 202 aa4.66□□□□□ -1.66
SMCHD1-209ENST00000583441 MYBBP1AQ9BQG0 1328 aaKnown RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms