RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 KCNE1P15382 129 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 ZSCAN20P17040 1043 aaPredicted RBP11.23□□□□□ -0.61
SS18-217ENST00000580958 BRD2P25440 801 aaKnown RBP11.23□□□□□ -0.61
SS18-217ENST00000580958 CDH8P55286 799 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 PAK2Q13177 524 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 MTFR1Q15390 333 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 ZBTB6Q15916 424 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 IFI16Q16666 785 aaKnown RBP11.23□□□□□ -0.61
SS18-217ENST00000580958 XKR4Q5GH76 650 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 PAPD7Q5XG87 772 aaKnown RBP11.23□□□□□ -0.61
SS18-217ENST00000580958 ACAD10Q6JQN1 1059 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 LRRN4CLQ8ND94 238 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 TPCN2Q8NHX9 752 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 RFFLQ8WZ73 363 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 THAP2Q9H0W7 228 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 CYP3A43Q9HB55 503 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 FAM105AQ9NUU6 356 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 PADI3Q9ULW8 664 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 PCDHGC5Q9Y5F6 944 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 TET1Q8NFU7 2136 aa11.23□□□□□ -0.61
SS18-217ENST00000580958 HTTP42858 3142 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 ARVCFO00192 962 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 XPOTO43592 962 aaKnown RBP11.22□□□□□ -0.61
SS18-217ENST00000580958 MGEA5O60502 916 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 CAND2O75155 1236 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 FTCDO95954 541 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 TFRCP02786 760 aaKnown RBP11.22□□□□□ -0.61
SS18-217ENST00000580958 UNGP13051 313 aaPredicted RBP11.22□□□□□ -0.61
SS18-217ENST00000580958 CCL5P13501 91 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 ITGA4P13612 1032 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 HSPA6P17066 643 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 GTF2F1P35269 517 aaKnown RBP eCLIP11.22□□□□□ -0.61
SS18-217ENST00000580958 TNNC1P63316 161 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 GPC5P78333 572 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 MYO1EQ12965 1108 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 TUBB2AQ13885 445 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 DSC3Q14574 896 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 ZNF394Q53GI3 561 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 NAA35Q5VZE5 725 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 C9orf57Q5W0N0 161 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 SMYD5Q6GMV2 418 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 TRIM72Q6ZMU5 477 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 PASD1Q8IV76 773 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 SPNS2Q8IVW8 549 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 HACE1Q8IYU2 909 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 MNS1Q8NEH6 495 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 SLC35G2Q8TBE7 412 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 ZNF606Q8WXB4 792 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 TSC1Q92574 1164 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 LPPQ93052 612 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 ZNF653Q96CK0 615 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 FAXDC2Q96IV6 333 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 DEFB118Q96PH6 123 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 TSPAN18Q96SJ8 248 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 TUBB2BQ9BVA1 445 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 PAK6Q9NQU5 681 aaPredicted RBP11.22□□□□□ -0.61
SS18-217ENST00000580958 WBP1LQ9NX94 342 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 JRKLQ9Y4A0 524 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 SAR1BQ9Y6B6 198 aa11.22□□□□□ -0.61
SS18-217ENST00000580958 CENPFP49454 3210 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 MEIS3P2A8K0S8 358 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 DNM1LO00429 736 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 PTGESO14684 152 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 CTIFO43310 598 aaKnown RBP11.21□□□□□ -0.61
SS18-217ENST00000580958 SRGAP2O75044 1071 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 CD4P01730 458 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 CYP1A1P04798 512 aaPredicted RBP11.21□□□□□ -0.61
SS18-217ENST00000580958 CKBP12277 381 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 HOXB1P14653 301 aaPredicted RBP11.21□□□□□ -0.61
SS18-217ENST00000580958 CD19P15391 556 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 IBSPP21815 317 aaPredicted RBP11.21□□□□□ -0.61
SS18-217ENST00000580958 RAD23BP54727 409 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 NOMO3P69849 1222 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 SOX4Q06945 474 aaPredicted RBP11.21□□□□□ -0.61
SS18-217ENST00000580958 ORC1Q13415 861 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 WHAMMP3Q1A5X7 153 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 TRAF7Q6Q0C0 670 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 MRPL10Q7Z7H8 261 aaKnown RBP11.21□□□□□ -0.61
SS18-217ENST00000580958 LRRC52Q8N7C0 313 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 LRRC57Q8N9N7 239 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 WHAMMQ8TF30 809 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 CPA5Q8WXQ8 436 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 CYFIP2Q96F07 1278 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 TWNKQ96RR1 684 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 ZSWIM1Q9BR11 485 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 TLR10Q9BXR5 811 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 ELOVL4Q9GZR5 314 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 GOLPH3Q9H4A6 298 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 OSGEPQ9NPF4 335 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 CTTNBP2NLQ9P2B4 639 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 HMGXB4Q9UGU5 601 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.21□□□□□ -0.61
SS18-217ENST00000580958 COG5Q9UP83 839 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 HYOU1Q9Y4L1 999 aa11.21□□□□□ -0.61
SS18-217ENST00000580958 V9GYY5 206 aaPredicted RBP11.21□□□□□ -0.61
SS18-217ENST00000580958 PCNTO95613 3336 aa11.21□□□□□ -0.62
SS18-217ENST00000580958 TSC2P49815 1807 aa11.21□□□□□ -0.62
SS18-217ENST00000580958 PIRO00625 290 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 CILPO75339 1184 aa11.2□□□□□ -0.62
SS18-217ENST00000580958 CYP1A2P05177 515 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms