RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 NT5C1BQ96P26 610 aa18.33■□□□□ 0.52
NUP88-210ENST00000574867 INTS2Q9H0H0 1204 aaKnown RBP18.33■□□□□ 0.52
NUP88-210ENST00000574867 NXF1Q9UBU9 619 aaKnown RBP18.33■□□□□ 0.52
NUP88-210ENST00000574867 SSX2IPQ9Y2D8 614 aa18.33■□□□□ 0.52
NUP88-210ENST00000574867 EPOPA6NHQ4 379 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 CTSAP10619 480 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 TKTP29401 623 aaKnown RBP18.32■□□□□ 0.52
NUP88-210ENST00000574867 DSG1Q02413 1049 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 TRIM65Q6PJ69 517 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 FAM163BP0C2L3 166 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 CREMQ03060 361 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 PTPROQ16827 1216 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 RTP2Q5QGT7 225 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 SPOPLQ6IQ16 392 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 LIMS2Q7Z4I7 341 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 METTL23Q86XA0 190 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 CEP57Q86XR8 500 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 PIK3R5Q8WYR1 880 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 MMS19Q96T76 1030 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 TCF25Q9BQ70 676 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 CRACR2AQ9BSW2 395 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 FAM124BQ9H5Z6 455 aaPredicted RBP18.32■□□□□ 0.52
NUP88-210ENST00000574867 APOBEC3GQ9HC16 384 aaKnown RBP18.32■□□□□ 0.52
NUP88-210ENST00000574867 NGRNQ9NPE2 291 aaKnown RBP18.32■□□□□ 0.52
NUP88-210ENST00000574867 RTN4Q9NQC3 1192 aaKnown RBP18.32■□□□□ 0.52
NUP88-210ENST00000574867 ENTPD7Q9NQZ7 604 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 L1RE1Q9UN81 338 aa18.32■□□□□ 0.52
NUP88-210ENST00000574867 TBXAS1P24557 533 aaPredicted RBP18.31■□□□□ 0.52
NUP88-210ENST00000574867 ASPAP45381 313 aa18.31■□□□□ 0.52
NUP88-210ENST00000574867 UBXN1Q04323 297 aa18.31■□□□□ 0.52
NUP88-210ENST00000574867 YWHAHQ04917 246 aaPredicted RBP18.31■□□□□ 0.52
NUP88-210ENST00000574867 SMC1AQ14683 1233 aaKnown RBP18.31■□□□□ 0.52
NUP88-210ENST00000574867 ANKS3Q6ZW76 656 aa18.31■□□□□ 0.52
NUP88-210ENST00000574867 TAS1R1Q7RTX1 841 aa18.31■□□□□ 0.52
NUP88-210ENST00000574867 TMC7Q7Z402 723 aa18.31■□□□□ 0.52
NUP88-210ENST00000574867 MRPL17Q9NRX2 175 aaKnown RBP18.31■□□□□ 0.52
NUP88-210ENST00000574867 FSCN2O14926 492 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 LRRN2O75325 713 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 TACC1O75410 805 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 TPM3P06753 285 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 DNAJB1P25685 340 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 PON1P27169 355 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 UBASH3AP57075 661 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 SOWAHAQ2M3V2 549 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 VARS2Q5ST30 1063 aaKnown RBP18.3■□□□□ 0.52
NUP88-210ENST00000574867 OVOS1Q6IE37 1185 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 ADGRF2Q8IZF7 708 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 PDCL2Q8N4E4 241 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 RIN2Q8WYP3 895 aaPredicted RBP18.3■□□□□ 0.52
NUP88-210ENST00000574867 FAM81BQ96LP2 452 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 ERGIC2Q96RQ1 377 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 OXCT2Q9BYC2 517 aaPredicted RBP18.3■□□□□ 0.52
NUP88-210ENST00000574867 BCO2Q9BYV7 579 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 CYP3A43Q9HB55 503 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.3■□□□□ 0.52
NUP88-210ENST00000574867 POLIQ9UNA4 740 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 IRAK3Q9Y616 596 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 CHD7Q9P2D1 2997 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 H7C4K7 107 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 OAZ2O95190 189 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 GCNT1Q02742 428 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 PTPN14Q15678 1187 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 KIAA0319Q5VV43 1072 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 WSCD1Q658N2 575 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 ZNF280DQ6N043 979 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 SCARA5Q6ZMJ2 495 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 TTC39CQ8N584 583 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 B3GALT6Q96L58 329 aa18.3■□□□□ 0.52
NUP88-210ENST00000574867 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.3■□□□□ 0.52
NUP88-210ENST00000574867 CBFA2T2O43439 604 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 LPXNO60711 386 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 SLC9A1P19634 815 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 LHX1P48742 406 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 ERVFC1P60507 584 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 CAMK1Q14012 370 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 PSMD5Q16401 504 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 MRPL38Q96DV4 380 aaKnown RBP18.29■□□□□ 0.52
NUP88-210ENST00000574867 PRDM12Q9H4Q4 367 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 SMYD3Q9H7B4 428 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 APEX2Q9UBZ4 518 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 TIMM13Q9Y5L4 95 aaPredicted RBP18.29■□□□□ 0.52
NUP88-210ENST00000574867 ATG2AQ2TAZ0 1938 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 RFX1P22670 979 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 WARSP23381 471 aaKnown RBP18.29■□□□□ 0.52
NUP88-210ENST00000574867 KCNMA1Q12791 1236 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 LRMPQ12912 555 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 CUL2Q13617 745 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 MRPL58Q14197 206 aaKnown RBP18.29■□□□□ 0.52
NUP88-210ENST00000574867 GRIN2CQ14957 1233 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 UVSSAQ2YD98 709 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 SARM1Q6SZW1 724 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 PPM1KQ8N3J5 372 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 LNX1Q8TBB1 728 aaPredicted RBP18.29■□□□□ 0.52
NUP88-210ENST00000574867 TATDN2Q93075 761 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 ELMO3Q96BJ8 720 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 NAP1L5Q96NT1 182 aaPredicted RBP18.29■□□□□ 0.52
NUP88-210ENST00000574867 PLCB1Q9NQ66 1216 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 LMCD1Q9NZU5 365 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 MTRRQ9UBK8 725 aa18.29■□□□□ 0.52
NUP88-210ENST00000574867 DAAM1Q9Y4D1 1078 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms