RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 OR5B17Q8NGF7 314 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 SYAP1Q96A49 352 aaPredicted RBP11.88□□□□□ -0.51
CHD3-216ENST00000573936 SENP8Q96LD8 212 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 METTL14Q9HCE5 456 aaKnown RBP11.88□□□□□ -0.51
CHD3-216ENST00000573936 MTRRQ9UBK8 725 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 CTNND2Q9UQB3 1225 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 PDCD11Q14690 1871 aaKnown RBP11.87□□□□□ -0.51
CHD3-216ENST00000573936 TRIP11Q15643 1979 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 TRIM49BA6NDI0 452 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 LRRIQ3A6PVS8 624 aaPredicted RBP11.87□□□□□ -0.51
CHD3-216ENST00000573936 I3L4J1 428 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 CYB561D2O14569 222 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 PPEF2O14830 753 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 TEX28O15482 410 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 GNA14O95837 355 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 CYP11A1P05108 521 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 IGFBP6P24592 240 aaPredicted RBP11.87□□□□□ -0.51
CHD3-216ENST00000573936 ATICP31939 592 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 CLCN4P51793 760 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 PMS1P54277 932 aaKnown RBP11.87□□□□□ -0.51
CHD3-216ENST00000573936 MCCD1P59942 119 aaPredicted RBP11.87□□□□□ -0.51
CHD3-216ENST00000573936 YWHAHQ04917 246 aaPredicted RBP11.87□□□□□ -0.51
CHD3-216ENST00000573936 BFSP1Q12934 665 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 MRPL58Q14197 206 aaKnown RBP11.87□□□□□ -0.51
CHD3-216ENST00000573936 SMAD2Q15796 467 aaKnown RBP11.87□□□□□ -0.51
CHD3-216ENST00000573936 VARS2Q5ST30 1063 aaKnown RBP11.87□□□□□ -0.51
CHD3-216ENST00000573936 ZNF280DQ6N043 979 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 TTI2Q6NXR4 508 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 PRSS55Q6UWB4 352 aaPredicted RBP11.87□□□□□ -0.51
CHD3-216ENST00000573936 SLC22A17Q8WUG5 538 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 HDAC7Q8WUI4 952 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 ZNF516Q92618 1163 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 PBXIP1Q96AQ6 731 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 B3GALT6Q96L58 329 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 PRRX2Q99811 253 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 DZANK1Q9NVP4 752 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 GDAP2Q9NXN4 497 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 MUTYHQ9UIF7 546 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 SIX4Q9UIU6 781 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 RWDD2AQ9UIY3 292 aa11.87□□□□□ -0.51
CHD3-216ENST00000573936 PTPRJQ12913 1337 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 MBTPS2O43462 519 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 HUS1O60921 280 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 OAZ2O95190 189 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 STAU1O95793 577 aaKnown RBP11.86□□□□□ -0.51
CHD3-216ENST00000573936 GLUD1P00367 558 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 C4BPAP04003 597 aaKnown RBP11.86□□□□□ -0.51
CHD3-216ENST00000573936 FAM163BP0C2L3 166 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 HOXB8P17481 243 aaPredicted RBP11.86□□□□□ -0.51
CHD3-216ENST00000573936 ERCC5P28715 1186 aaPredicted RBP11.86□□□□□ -0.51
CHD3-216ENST00000573936 GTF2H1P32780 548 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 SMAD4Q13485 552 aaKnown RBP11.86□□□□□ -0.51
CHD3-216ENST00000573936 BIRC3Q13489 604 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 KCNC3Q14003 757 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 CTXN3Q4LDR2 81 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 LLGL2Q6P1M3 1020 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 SASS6Q6UVJ0 657 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 RBM43Q6ZSC3 357 aaKnown RBP11.86□□□□□ -0.51
CHD3-216ENST00000573936 DPH6Q7L8W6 267 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 FRMD5Q7Z6J6 570 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 RNF135Q8IUD6 432 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 SUGP1Q8IWZ8 645 aaKnown RBP11.86□□□□□ -0.51
CHD3-216ENST00000573936 THEM5Q8N1Q8 247 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 TMEM130Q8N3G9 435 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 CXorf38Q8TB03 319 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 SPATA18Q8TC71 538 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 PLEKHO2Q8TD55 490 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 EDAQ92838 391 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 BORCS6Q96GS4 357 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 HPDLQ96IR7 371 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 DUSP9Q99956 384 aaKnown RBP11.86□□□□□ -0.51
CHD3-216ENST00000573936 CLSTN3Q9BQT9 956 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 PLEKHA4Q9H4M7 779 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 ARMCX3Q9UH62 379 aaPredicted RBP11.86□□□□□ -0.51
CHD3-216ENST00000573936 CD207Q9UJ71 328 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 HCFC2Q9Y5Z7 792 aa11.86□□□□□ -0.51
CHD3-216ENST00000573936 ZNF318Q5VUA4 2279 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 OR6C75A6NL08 312 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 SPTLC1O15269 473 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 TBC1D4O60343 1298 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 LETM1O95202 739 aaPredicted RBP11.85□□□□□ -0.51
CHD3-216ENST00000573936 CST3P01034 146 aaPredicted RBP11.85□□□□□ -0.51
CHD3-216ENST00000573936 PTPN5P54829 565 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 STX17P56962 302 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 DLG4P78352 724 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 RAB33AQ14088 237 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 TPD52L1Q16890 204 aaPredicted RBP11.85□□□□□ -0.51
CHD3-216ENST00000573936 KLHL40Q2TBA0 621 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 ZACNQ401N2 412 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 CCDC40Q4G0X9 1142 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 TDRD10Q5VZ19 366 aaKnown RBP11.85□□□□□ -0.51
CHD3-216ENST00000573936 OVOS1Q6IE37 1185 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 SLC8B1Q6J4K2 584 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 ANKRD54Q6NXT1 300 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 SV2AQ7L0J3 742 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 RTL10Q7L3V2 364 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 PALB2Q86YC2 1186 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 TMEM86AQ8N2M4 240 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 TOP6BLQ8N6T0 577 aa11.85□□□□□ -0.51
CHD3-216ENST00000573936 SRRTQ9BXP5 876 aaKnown RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms