RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 OR10T2Q8NGX3 314 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 RAD54LQ92698 747 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 SMARCD2Q92925 531 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 KIF12Q96FN5 646 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 BORCS6Q96GS4 357 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 AK8Q96MA6 479 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 PGLYRP2Q96PD5 576 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 BCO2Q9BYV7 579 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 ZFP14Q9HCL3 533 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 TRPV5Q9NQA5 729 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 SPATA6Q9NWH7 488 aaPredicted RBP7.31□□□□□ -1.24
VPS53-213ENST00000572334 CPSF3Q9UKF6 684 aaKnown RBP7.31□□□□□ -1.24
VPS53-213ENST00000572334 ODF2LQ9ULJ1 636 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 MAFFQ9ULX9 164 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 UBQLN1Q9UMX0 589 aaKnown RBP7.31□□□□□ -1.24
VPS53-213ENST00000572334 STYXL1Q9Y6J8 313 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 MYO18AQ92614 2054 aaKnown RBP7.31□□□□□ -1.24
VPS53-213ENST00000572334 ACACBO00763 2458 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 MED19A0JLT2 244 aaPredicted RBP7.3□□□□□ -1.24
VPS53-213ENST00000572334 MTMR11A4FU01 709 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 HEPACAM2A8MVW5 462 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 ZNF197O14709 1029 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 OGTO15294 1046 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 LAMTOR5O43504 91 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 SLC26A4O43511 780 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 PPP1R37O75864 691 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 SOAT2O75908 522 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 CHRNB1P11230 501 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 MYL4P12829 197 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 CPB1P15086 417 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 PSMC3P17980 439 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 PLCG1P19174 1290 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 TYMPP19971 482 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 NMT1P30419 496 aaKnown RBP7.3□□□□□ -1.24
VPS53-213ENST00000572334 GDI1P31150 447 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 MAGEA9P43362 315 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 WNT7BP56706 349 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 FOXK2Q01167 660 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 CSTF1Q05048 431 aaKnown RBP7.3□□□□□ -1.24
VPS53-213ENST00000572334 KARSQ15046 597 aaKnown RBP7.3□□□□□ -1.24
VPS53-213ENST00000572334 PTPAQ15257 358 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 ZC2HC1CQ53FD0 456 aaPredicted RBP7.3□□□□□ -1.24
VPS53-213ENST00000572334 C9orf57Q5W0N0 161 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 JADE1Q6IE81 842 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 ZC3H14Q6PJT7 736 aaKnown RBP7.3□□□□□ -1.24
VPS53-213ENST00000572334 TXNDC11Q6PKC3 985 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 ZNF852Q6ZMS4 543 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 MAMSTRQ6ZN01 415 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 LRRTM3Q86VH5 581 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 GPBP1Q86WP2 473 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 MFSD6LQ8IWD5 586 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 EFCAB13Q8IY85 973 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 ATAD1Q8NBU5 361 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 ZSWIM2Q8NEG5 633 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 ZSCAN18Q8TBC5 510 aaPredicted RBP7.3□□□□□ -1.24
VPS53-213ENST00000572334 KCNG4Q8TDN1 519 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 RUBCNQ92622 972 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 SENP8Q96LD8 212 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 ZNF512Q96ME7 567 aaPredicted RBP7.3□□□□□ -1.24
VPS53-213ENST00000572334 NELL2Q99435 816 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 TRMT61BQ9BVS5 477 aaKnown RBP7.3□□□□□ -1.24
VPS53-213ENST00000572334 STRA6Q9BX79 667 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 EPC1Q9H2F5 836 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 CHRDQ9H2X0 955 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 BRD9Q9H8M2 597 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 IL21Q9HBE4 155 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 PARVGQ9HBI0 331 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 C2orf42Q9NWW7 574 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 DLL3Q9NYJ7 618 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 LARSQ9P2J5 1176 aaKnown RBP7.3□□□□□ -1.24
VPS53-213ENST00000572334 KCNG1Q9UIX4 513 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 SLC27A5Q9Y2P5 690 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 PCDHGA2Q9Y5H1 932 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 EPG5Q9HCE0 2579 aa7.3□□□□□ -1.24
VPS53-213ENST00000572334 MAP1BP46821 2468 aaKnown RBP7.29□□□□□ -1.24
VPS53-213ENST00000572334 NUP205Q92621 2012 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 A0A1W2PRU2 124 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 OR6C75A6NL08 312 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 K7ENM7 598 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 HNRNPDLO14979 420 aaKnown RBP7.29□□□□□ -1.24
VPS53-213ENST00000572334 TRAK2O60296 914 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 KINO60870 393 aaKnown RBP7.29□□□□□ -1.24
VPS53-213ENST00000572334 CYP11A1P05108 521 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 ATF6P18850 670 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 MARCKSP29966 332 aaPredicted RBP7.29□□□□□ -1.24
VPS53-213ENST00000572334 ADSSP30520 456 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 SOX9P48436 509 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 ACOT2P49753 483 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 LIG4P49917 911 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 CDR1P51861 262 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 PPP2R3AQ06190 1150 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 DMWDQ09019 674 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 KCNA1Q09470 495 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 FCHO2Q0JRZ9 810 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 MYBPC2Q14324 1141 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 DHX8Q14562 1220 aaKnown RBP7.29□□□□□ -1.24
VPS53-213ENST00000572334 SF3A1Q15459 793 aaKnown RBP7.29□□□□□ -1.24
VPS53-213ENST00000572334 CYP4A22Q5TCH4 519 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 OVOS1Q6IE37 1185 aa7.29□□□□□ -1.24
VPS53-213ENST00000572334 DNAJB7Q7Z6W7 309 aaPredicted RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms