RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TNFSF9P41273 254 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 PAFAH1B1P43034 410 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 NOP2P46087 812 aaKnown RBP8.52□□□□□ -1.05
VPS39-213ENST00000570062 ACLYP53396 1101 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 TNNC1P63316 161 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 ITGA7Q13683 1181 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 PTGISQ16647 500 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 SLC10A6Q3KNW5 377 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 FAM47CQ5HY64 1035 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 FAM26DQ5JW98 314 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 EEF1DP3Q658K8 133 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 ACAD10Q6JQN1 1059 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 CCDC70Q6NSX1 233 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 GJB7Q6PEY0 223 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 DPH6Q7L8W6 267 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 GLYCTKQ8IVS8 523 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 RPUSD2Q8IZ73 545 aaKnown RBP8.52□□□□□ -1.05
VPS39-213ENST00000570062 SLC35F6Q8N357 371 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 ZSWIM2Q8NEG5 633 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 OR5B17Q8NGF7 314 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 EPS8L1Q8TE68 723 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 U2AF1L4Q8WU68 220 aaKnown RBP8.52□□□□□ -1.05
VPS39-213ENST00000570062 RFFLQ8WZ73 363 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 ZNF560Q96MR9 790 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 KREMEN1Q96MU8 473 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 OSMRQ99650 979 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 SYT11Q9BT88 431 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 MRPL47Q9HD33 250 aaKnown RBP8.52□□□□□ -1.05
VPS39-213ENST00000570062 SEPT11Q9NVA2 429 aaKnown RBP8.52□□□□□ -1.05
VPS39-213ENST00000570062 DPP3Q9NY33 737 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 CNTN3Q9P232 1028 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 GMPR2Q9P2T1 348 aaKnown RBP8.52□□□□□ -1.05
VPS39-213ENST00000570062 NENFQ9UMX5 172 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 PIN4Q9Y237 131 aaKnown RBP8.52□□□□□ -1.05
VPS39-213ENST00000570062 GINS2Q9Y248 185 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 PCDHB4Q9Y5E5 795 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 PCDHGC5Q9Y5F6 944 aa8.52□□□□□ -1.05
VPS39-213ENST00000570062 MACROD2A1Z1Q3 448 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 DLL1O00548 723 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 CTIFO43310 598 aaKnown RBP8.51□□□□□ -1.05
VPS39-213ENST00000570062 ZNF623O75123 536 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 VNN1O95497 513 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 NPTXRO95502 500 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 FTLP02792 175 aaPredicted RBP8.51□□□□□ -1.05
VPS39-213ENST00000570062 INHAP05111 366 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 EDN1P05305 212 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 KRT19P08727 400 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 COL6A1P12109 1028 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 MCM3P25205 808 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 CCND3P30281 292 aaPredicted RBP8.51□□□□□ -1.05
VPS39-213ENST00000570062 POLR2BP30876 1174 aaKnown RBP8.51□□□□□ -1.05
VPS39-213ENST00000570062 APBA1Q02410 837 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 TAP1Q03518 808 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 XKR4Q5GH76 650 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 ZBTB41Q5SVQ8 909 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 LIN9Q5TKA1 542 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 RUFY4Q6ZNE9 571 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 MTERF4Q7Z6M4 381 aaKnown RBP8.51□□□□□ -1.05
VPS39-213ENST00000570062 UNC93AQ86WB7 457 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 GPIHBP1Q8IV16 184 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 CAGE1Q8TC20 777 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 ZNF296Q8WUU4 475 aaPredicted RBP8.51□□□□□ -1.05
VPS39-213ENST00000570062 UBXN4Q92575 508 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 HPDLQ96IR7 371 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 PBKQ96KB5 322 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 WDR24Q96S15 920 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 SELENOOQ9BVL4 669 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 PLVAPQ9BX97 442 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 MTMR12Q9C0I1 747 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 LACRTQ9GZZ8 138 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 AVENQ9NQS1 362 aaPredicted RBP8.51□□□□□ -1.05
VPS39-213ENST00000570062 NOCTQ9UK39 431 aaKnown RBP8.51□□□□□ -1.05
VPS39-213ENST00000570062 GIT1Q9Y2X7 761 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 HYOU1Q9Y4L1 999 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 MRFAP1Q9Y605 127 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 ARID2Q68CP9 1835 aa8.51□□□□□ -1.05
VPS39-213ENST00000570062 MYH11P35749 1972 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 UQCRHLA0A096LP55 91 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 CTAGE15A4D2H0 777 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 MIF4GDA9UHW6 222 aaKnown RBP8.5□□□□□ -1.05
VPS39-213ENST00000570062 DNM1LO00429 736 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 MTA2O94776 668 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 SGPL1O95470 568 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 CST3P01034 146 aaPredicted RBP8.5□□□□□ -1.05
VPS39-213ENST00000570062 ITGB3P05106 788 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 UQCRHP07919 91 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 CTAGE8P0CG41 777 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 ELNP15502 786 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 ACO1P21399 889 aaKnown RBP8.5□□□□□ -1.05
VPS39-213ENST00000570062 GNA15P30679 374 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 RPL9P32969 192 aaKnown RBP8.5□□□□□ -1.05
VPS39-213ENST00000570062 NSFP46459 744 aaKnown RBP8.5□□□□□ -1.05
VPS39-213ENST00000570062 SMCPP49901 116 aaPredicted RBP8.5□□□□□ -1.05
VPS39-213ENST00000570062 GALCP54803 685 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 MYL6P60660 151 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 OSTNP61366 133 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 ITIH3Q06033 890 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 PAK2Q13177 524 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 BFSP2Q13515 415 aa8.5□□□□□ -1.05
VPS39-213ENST00000570062 ZBTB6Q15916 424 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms