RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CLK3P49761 638 aaKnown RBP11.42□□□□□ -0.58
CLK3-226ENST00000569406 ADAM17P78536 824 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 ARID5AQ03989 594 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 KCNA1Q09470 495 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 MED21Q13503 144 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 BBS9Q3SYG4 887 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 ACSBG2Q5FVE4 666 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 SYCP2LQ5T4T6 812 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 ECHDC2Q86YB7 292 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 PSKH2Q96QS6 385 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 KLHL4Q9C0H6 718 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 NHEJ1Q9H9Q4 299 aaPredicted RBP11.42□□□□□ -0.58
CLK3-226ENST00000569406 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.42□□□□□ -0.58
CLK3-226ENST00000569406 IP6K2Q9UHH9 426 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 TRAF3IP3Q9Y228 551 aa11.42□□□□□ -0.58
CLK3-226ENST00000569406 TRIM49BA6NDI0 452 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 A8MX80 341 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 TMEM114B3SHH9 223 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 DCTN3O75935 186 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 PSMG1O95456 288 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 CALML3P27482 149 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 TNNC1P63316 161 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 TRIM14Q14142 442 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 NDUFA5Q16718 116 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 SPDYCQ5MJ68 293 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 C4orf50Q6ZRC1 276 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 SCYL3Q8IZE3 742 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 ADSSL1Q8N142 457 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 EXD1Q8NHP7 514 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 PPP4R1Q8TF05 950 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 TTC1Q99614 292 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 GRIP2Q9C0E4 1043 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 NEUROG2Q9H2A3 272 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 KCNK9Q9NPC2 374 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 STK39Q9UEW8 545 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 SLX4Q8IY92 1834 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 A8MU76 341 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 ACSL4O60488 711 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 ATP5HO75947 161 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 RPN1P04843 607 aaKnown RBP11.41□□□□□ -0.58
CLK3-226ENST00000569406 SRGNP10124 158 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 PRKACAP17612 351 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 MMP13P45452 471 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 AMPD3Q01432 767 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 STK4Q13043 487 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 KCNJ8Q15842 424 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 ZNF658Q5TYW1 1059 aaPredicted RBP11.41□□□□□ -0.58
CLK3-226ENST00000569406 LINC00469Q8N7U9 141 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 TLCD1Q96CP7 247 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 ITPKCQ96DU7 683 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 LRRC37BQ96QE4 947 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 MTMR9Q96QG7 549 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 IFIH1Q9BYX4 1025 aaKnown RBP11.41□□□□□ -0.58
CLK3-226ENST00000569406 ISCUQ9H1K1 167 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 PLGRKTQ9HBL7 147 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 RWDD2AQ9UIY3 292 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 ICMTO60725 284 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 KCNJ13O60928 360 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 GJB6O95452 261 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 CRYZL1O95825 349 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 POLGP54098 1239 aaPredicted RBP11.41□□□□□ -0.58
CLK3-226ENST00000569406 PTPROQ16827 1216 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 TXNRD1Q16881 649 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 MAP3K21Q5TCX8 1036 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 RNF19BQ6ZMZ0 732 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 USP43Q70EL4 1123 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 ZNF572Q7Z3I7 529 aaPredicted RBP11.41□□□□□ -0.58
CLK3-226ENST00000569406 HEATR3Q7Z4Q2 680 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 ZFPM1Q8IX07 1006 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 VPS52Q8N1B4 723 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 CEP63Q96MT8 703 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 EBF3Q9H4W6 596 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 TBC1D23Q9NUY8 699 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 MTMR4Q9NYA4 1195 aa11.41□□□□□ -0.58
CLK3-226ENST00000569406 ECE2O60344 883 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 OAS1P00973 400 aaKnown RBP11.4□□□□□ -0.58
CLK3-226ENST00000569406 AKR1B1P15121 316 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 CDR2Q01850 454 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 MGAT5Q09328 741 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 PCNX4Q63HM2 1172 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 CYP4V2Q6ZWL3 525 aaPredicted RBP11.4□□□□□ -0.58
CLK3-226ENST00000569406 ZNF507Q8TCN5 953 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 TRPC4APQ8TEL6 797 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 MCUR1Q96AQ8 359 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 AKT1S1Q96B36 256 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 ECSITQ9BQ95 431 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 MRPL9Q9BYD2 267 aaKnown RBP11.4□□□□□ -0.58
CLK3-226ENST00000569406 MMRN2Q9H8L6 949 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 LIN28AQ9H9Z2 209 aaKnown RBP11.4□□□□□ -0.58
CLK3-226ENST00000569406 TMEM260Q9NX78 707 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 TBK1Q9UHD2 729 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 RABGAP1Q9Y3P9 1069 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 SNX9Q9Y5X1 595 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 DAPK3O43293 454 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 STRNO43815 780 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 CLPTM1O96005 669 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 FUCA1P04066 466 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 SHMT1P34896 483 aa11.4□□□□□ -0.58
CLK3-226ENST00000569406 COPB1P53618 953 aaKnown RBP11.4□□□□□ -0.58
CLK3-226ENST00000569406 KCNMA1Q12791 1236 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms