RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 L3MBTL3Q96JM7 780 aaPredicted RBP15.29■□□□□ 0.04
VPS35-210ENST00000568784 RILPQ96NA2 401 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 ARHGEF3Q9NR81 526 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 ADRA2BP18089 450 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 CYP24A1Q07973 514 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 CFAP61Q8NHU2 1237 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 TRIM11Q96F44 468 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 HEY2Q9UBP5 337 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 DSG3P32926 999 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 SLC1A1P43005 524 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 ORC1Q13415 861 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 TLDC1Q6P9B6 456 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 FAM81BQ96LP2 452 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 CCDC134Q9H6E4 229 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 ARMCX1Q9P291 453 aa15.29■□□□□ 0.04
VPS35-210ENST00000568784 COL14A1Q05707 1796 aaKnown RBP15.29■□□□□ 0.04
VPS35-210ENST00000568784 F5H423 210 aaPredicted RBP15.28■□□□□ 0.04
VPS35-210ENST00000568784 LMNB2Q03252 620 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 ZRSR2Q15696 482 aaKnown RBP15.28■□□□□ 0.04
VPS35-210ENST00000568784 CCNG2Q16589 344 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 TMEM154Q6P9G4 183 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 AGGF1Q8N302 714 aaeCLIP15.28■□□□□ 0.04
VPS35-210ENST00000568784 HSPH1Q92598 858 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 CFAP36Q96G28 342 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 DDX27Q96GQ7 796 aaKnown RBP15.28■□□□□ 0.04
VPS35-210ENST00000568784 PIK3CDO00329 1044 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 BRD2P25440 801 aaKnown RBP15.28■□□□□ 0.04
VPS35-210ENST00000568784 GAD2Q05329 585 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 RCN1Q15293 331 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 DACT2Q5SW24 774 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 CGB2Q6NT52 195 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 SYDE1Q6ZW31 735 aaPredicted RBP15.28■□□□□ 0.04
VPS35-210ENST00000568784 TRABD2AQ86V40 505 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 RFX6Q8HWS3 928 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 BSNDQ8WZ55 320 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 TRIM55Q9BYV6 548 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 POLR3FQ9H1D9 316 aaPredicted RBP15.28■□□□□ 0.04
VPS35-210ENST00000568784 TMX2Q9Y320 296 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 CLGNO14967 610 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 INHBAP08476 426 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 ARFIP2P53365 341 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 HADHBP55084 474 aaKnown RBP15.28■□□□□ 0.04
VPS35-210ENST00000568784 THEMIS2Q5TEJ8 643 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 LRRC6Q86X45 466 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 DNAJC9Q8WXX5 260 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 MASTLQ96GX5 879 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 MSTO1Q9BUK6 570 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 SLC13A1Q9BZW2 595 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 RNPEPL1Q9HAU8 725 aa15.28■□□□□ 0.04
VPS35-210ENST00000568784 RBAKQ9NYW8 714 aaPredicted RBP15.28■□□□□ 0.04
VPS35-210ENST00000568784 PHBP35232 272 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 TFAMQ00059 246 aaKnown RBP15.27■□□□□ 0.04
VPS35-210ENST00000568784 TRPC3Q13507 836 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 TMEM161BQ8NDZ6 487 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 SPDYE1Q8NFV5 336 aaPredicted RBP15.27■□□□□ 0.04
VPS35-210ENST00000568784 TARS2Q9BW92 718 aaKnown RBP15.27■□□□□ 0.04
VPS35-210ENST00000568784 IDI2Q9BXS1 227 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 AGO2Q9UKV8 859 aaKnown RBP15.27■□□□□ 0.04
VPS35-210ENST00000568784 WEE2P0C1S8 567 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 GTF2H1P32780 548 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 NRLP54845 237 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 GTF2BQ00403 316 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 CENPCQ03188 943 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 LARGE2Q8N3Y3 721 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 HIPK4Q8NE63 616 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 TCP10LQ8TDR4 215 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 ZNF75CPQ92670 426 aaPredicted RBP15.27■□□□□ 0.04
VPS35-210ENST00000568784 FAM161BQ96MY7 647 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 FAM111AQ96PZ2 611 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 TSC22D3Q99576 134 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 AGO4Q9HCK5 861 aaKnown RBP15.27■□□□□ 0.04
VPS35-210ENST00000568784 FBXO6Q9NRD1 293 aaPredicted RBP15.27■□□□□ 0.04
VPS35-210ENST00000568784 ZFATQ9P243 1243 aa15.27■□□□□ 0.04
VPS35-210ENST00000568784 PSMC3IPQ9P2W1 217 aaPredicted RBP15.27■□□□□ 0.04
VPS35-210ENST00000568784 K7ERI5 159 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 CALB2P22676 271 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 PSMA2P25787 234 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 IVDP26440 423 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 GCLCP48506 637 aaPredicted RBP15.27■□□□□ 0.03
VPS35-210ENST00000568784 NLRP11P59045 1033 aaKnown RBP15.27■□□□□ 0.03
VPS35-210ENST00000568784 KDSRQ06136 332 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 NFIL3Q16649 462 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 OTOAQ7RTW8 1153 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 CDR2LQ86X02 465 aaPredicted RBP15.27■□□□□ 0.03
VPS35-210ENST00000568784 TTC1Q99614 292 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 PPARGC1AQ9UBK2 798 aaKnown RBP15.27■□□□□ 0.03
VPS35-210ENST00000568784 ASTN2O75129 1339 aaPredicted RBP15.27■□□□□ 0.03
VPS35-210ENST00000568784 FDX1P10109 184 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 SPP2Q13103 211 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 RNF43Q68DV7 783 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 FAM160B2Q86V87 743 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 FEZF2Q8TBJ5 459 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 RBM41Q96IZ5 413 aaKnown RBP15.27■□□□□ 0.03
VPS35-210ENST00000568784 SENP7Q9BQF6 1050 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 TBC1D22BQ9NU19 505 aa15.27■□□□□ 0.03
VPS35-210ENST00000568784 UMODL1Q5DID0 1318 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 CST8O60676 142 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 LPXNO60711 386 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 STAM2O75886 525 aa15.26■□□□□ 0.03
VPS35-210ENST00000568784 MARK3P27448 753 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms