RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 PLD1Q13393 1074 aa24.3■■□□□ 1.48
CLN3-232ENST00000568443 METTL23Q86XA0 190 aa24.3■■□□□ 1.48
CLN3-232ENST00000568443 HS6ST3Q8IZP7 471 aa24.3■■□□□ 1.48
CLN3-232ENST00000568443 LEMD2Q8NC56 503 aa24.3■■□□□ 1.48
CLN3-232ENST00000568443 SAAL1Q96ER3 474 aa24.3■■□□□ 1.48
CLN3-232ENST00000568443 TNMDQ9H2S6 317 aa24.3■■□□□ 1.48
CLN3-232ENST00000568443 CUEDC2Q9H467 287 aa24.3■■□□□ 1.48
CLN3-232ENST00000568443 TMEM206Q9H813 350 aa24.3■■□□□ 1.48
CLN3-232ENST00000568443 ASAH2Q9NR71 780 aa24.3■■□□□ 1.48
CLN3-232ENST00000568443 DSEQ9UL01 958 aa24.3■■□□□ 1.48
CLN3-232ENST00000568443 SIT1Q9Y3P8 196 aa24.3■■□□□ 1.48
CLN3-232ENST00000568443 YIPF1Q9Y548 306 aa24.3■■□□□ 1.48
CLN3-232ENST00000568443 SCN1AP35498 2009 aa24.29■■□□□ 1.48
CLN3-232ENST00000568443 CYB561D2O14569 222 aa24.29■■□□□ 1.48
CLN3-232ENST00000568443 VNN2O95498 520 aa24.29■■□□□ 1.48
CLN3-232ENST00000568443 CYP11A1P05108 521 aa24.29■■□□□ 1.48
CLN3-232ENST00000568443 ZSCAN22P10073 491 aaPredicted RBP24.29■■□□□ 1.48
CLN3-232ENST00000568443 GARTP22102 1010 aa24.29■■□□□ 1.48
CLN3-232ENST00000568443 CCR2P41597 374 aa24.29■■□□□ 1.48
CLN3-232ENST00000568443 ALDH1A3P47895 512 aa24.29■■□□□ 1.48
CLN3-232ENST00000568443 EPHB3P54753 998 aa24.29■■□□□ 1.48
CLN3-232ENST00000568443 AMPD3Q01432 767 aa24.29■■□□□ 1.48
CLN3-232ENST00000568443 SNW1Q13573 536 aaKnown RBP24.29■■□□□ 1.48
CLN3-232ENST00000568443 FOXD4L6Q3SYB3 417 aaPredicted RBP24.29■■□□□ 1.48
CLN3-232ENST00000568443 FOXD4L3Q6VB84 417 aaPredicted RBP24.29■■□□□ 1.48
CLN3-232ENST00000568443 STXBP4Q6ZWJ1 553 aa24.29■■□□□ 1.48
CLN3-232ENST00000568443 EFCAB13Q8IY85 973 aa24.29■■□□□ 1.48
CLN3-232ENST00000568443 PYM1Q9BRP8 204 aaKnown RBP24.29■■□□□ 1.48
CLN3-232ENST00000568443 SLC27A5Q9Y2P5 690 aa24.29■■□□□ 1.48
CLN3-232ENST00000568443 ZFHX2Q9C0A1 2572 aaPredicted RBP24.28■■□□□ 1.48
CLN3-232ENST00000568443 PRPF6O94906 941 aaKnown RBP24.28■■□□□ 1.48
CLN3-232ENST00000568443 STARD6P59095 220 aa24.28■■□□□ 1.48
CLN3-232ENST00000568443 TFAMQ00059 246 aaKnown RBP24.28■■□□□ 1.48
CLN3-232ENST00000568443 E2F4Q16254 413 aa24.28■■□□□ 1.48
CLN3-232ENST00000568443 SLC44A4Q53GD3 710 aa24.28■■□□□ 1.48
CLN3-232ENST00000568443 TANGO2Q6ICL3 276 aa24.28■■□□□ 1.48
CLN3-232ENST00000568443 CENPPQ6IPU0 288 aa24.28■■□□□ 1.48
CLN3-232ENST00000568443 POTEHQ6S545 545 aa24.28■■□□□ 1.48
CLN3-232ENST00000568443 THEM5Q8N1Q8 247 aa24.28■■□□□ 1.48
CLN3-232ENST00000568443 IQUBQ8NA54 791 aa24.28■■□□□ 1.48
CLN3-232ENST00000568443 NOC3LQ8WTT2 800 aaKnown RBP24.28■■□□□ 1.48
CLN3-232ENST00000568443 CACTINQ8WUQ7 758 aaKnown RBP24.28■■□□□ 1.48
CLN3-232ENST00000568443 ELSPBP1Q96BH3 223 aa24.28■■□□□ 1.48
CLN3-232ENST00000568443 DHX58Q96C10 678 aa24.28■■□□□ 1.48
CLN3-232ENST00000568443 FGFBP2Q9BYJ0 223 aa24.28■■□□□ 1.48
CLN3-232ENST00000568443 PLA2G2FQ9BZM2 168 aa24.28■■□□□ 1.48
CLN3-232ENST00000568443 KBTBD4Q9NVX7 518 aa24.28■■□□□ 1.48
CLN3-232ENST00000568443 EPHA5P54756 1037 aa24.27■■□□□ 1.48
CLN3-232ENST00000568443 ANGPT1Q15389 498 aa24.27■■□□□ 1.48
CLN3-232ENST00000568443 SV2CQ496J9 727 aa24.27■■□□□ 1.48
CLN3-232ENST00000568443 FAM78AQ5JUQ0 283 aa24.27■■□□□ 1.48
CLN3-232ENST00000568443 SHC4Q6S5L8 630 aa24.27■■□□□ 1.48
CLN3-232ENST00000568443 BRSK2Q8IWQ3 736 aa24.27■■□□□ 1.48
CLN3-232ENST00000568443 ATAD1Q8NBU5 361 aa24.27■■□□□ 1.48
CLN3-232ENST00000568443 ZSWIM2Q8NEG5 633 aa24.27■■□□□ 1.48
CLN3-232ENST00000568443 TMEM209Q96SK2 561 aa24.27■■□□□ 1.48
CLN3-232ENST00000568443 CRISPLD1Q9H336 500 aa24.27■■□□□ 1.48
CLN3-232ENST00000568443 PCIF1Q9H4Z3 704 aa24.27■■□□□ 1.48
CLN3-232ENST00000568443 ZFP14Q9HCL3 533 aa24.27■■□□□ 1.48
CLN3-232ENST00000568443 RBAKQ9NYW8 714 aaPredicted RBP24.27■■□□□ 1.48
CLN3-232ENST00000568443 MTMR11A4FU01 709 aa24.26■■□□□ 1.47
CLN3-232ENST00000568443 GOLGA8IPA6NC78 632 aa24.26■■□□□ 1.47
CLN3-232ENST00000568443 GOLGA8JA6NMD2 632 aa24.26■■□□□ 1.47
CLN3-232ENST00000568443 KPNA7A9QM74 516 aa24.26■■□□□ 1.47
CLN3-232ENST00000568443 EXTL3O43909 919 aa24.26■■□□□ 1.47
CLN3-232ENST00000568443 F13A1P00488 732 aa24.26■■□□□ 1.47
CLN3-232ENST00000568443 DCNP07585 359 aaKnown RBP24.26■■□□□ 1.47
CLN3-232ENST00000568443 PRKCQQ04759 706 aa24.26■■□□□ 1.47
CLN3-232ENST00000568443 MLF2Q15773 248 aaPredicted RBP24.26■■□□□ 1.47
CLN3-232ENST00000568443 SPRYD3Q8NCJ5 442 aa24.26■■□□□ 1.47
CLN3-232ENST00000568443 OR10T2Q8NGX3 314 aa24.26■■□□□ 1.47
CLN3-232ENST00000568443 KCNG4Q8TDN1 519 aa24.26■■□□□ 1.47
CLN3-232ENST00000568443 CBWD1Q9BRT8 395 aa24.26■■□□□ 1.47
CLN3-232ENST00000568443 TRIM9Q9C026 710 aa24.26■■□□□ 1.47
CLN3-232ENST00000568443 GJA1P17302 382 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 PNPLA4P41247 253 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 ASIC1P78348 528 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 SLC39A12Q504Y0 691 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 WSCD1Q658N2 575 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 PJA1Q8NG27 643 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 SMARCD2Q92925 531 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 ZSWIM3Q96MP5 696 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 ZNF560Q96MR9 790 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 ASB16Q96NS5 453 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 FOXQ1Q9C009 403 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 GPR88Q9GZN0 384 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 ZCWPW1Q9H0M4 648 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 HSFX1Q9UBD0 423 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 ASB3Q9Y575 518 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 USP34Q70CQ2 3546 aa24.25■■□□□ 1.47
CLN3-232ENST00000568443 KANSL1LA0AUZ9 987 aa24.24■■□□□ 1.47
CLN3-232ENST00000568443 PROB1E7EW31 1015 aa24.24■■□□□ 1.47
CLN3-232ENST00000568443 NRG2O14511 850 aaPredicted RBP24.24■■□□□ 1.47
CLN3-232ENST00000568443 GFRA3O60609 400 aa24.24■■□□□ 1.47
CLN3-232ENST00000568443 MOSPD3O75425 235 aa24.24■■□□□ 1.47
CLN3-232ENST00000568443 NBL1P41271 181 aa24.24■■□□□ 1.47
CLN3-232ENST00000568443 ME1P48163 572 aa24.24■■□□□ 1.47
CLN3-232ENST00000568443 TUFMP49411 452 aaKnown RBP24.24■■□□□ 1.47
CLN3-232ENST00000568443 WNT7BP56706 349 aa24.24■■□□□ 1.47
CLN3-232ENST00000568443 ATL3Q6DD88 541 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms