RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 H0Y858 1186 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 CYB561D2O14569 222 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 ITGB3P05106 788 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 ASGR2P07307 311 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 OR4Q2P0C623 313 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 POLR2BP30876 1174 aaKnown RBP16.23■□□□□ 0.19
VPS39-210ENST00000568357 HOXA9P31269 272 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 TAF6P49848 677 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 NTHL1P78549 312 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 SNRNP35Q16560 246 aaKnown RBP16.23■□□□□ 0.19
VPS39-210ENST00000568357 TPGS2Q68CL5 300 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 LMBRD2Q68DH5 695 aaPredicted RBP16.23■□□□□ 0.19
VPS39-210ENST00000568357 OVOS1Q6IE37 1185 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 RNF19BQ6ZMZ0 732 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 HS2ST1Q7LGA3 356 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 OTOP3Q7RTS5 596 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 GRASPQ7Z6J2 395 aaPredicted RBP16.23■□□□□ 0.19
VPS39-210ENST00000568357 TCEAL8Q8IYN2 117 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 FMR1NBQ8N0W7 255 aaPredicted RBP16.23■□□□□ 0.19
VPS39-210ENST00000568357 PLCD3Q8N3E9 789 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 CSGALNACT2Q8N6G5 542 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 OR5B17Q8NGF7 314 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 KIAA1586Q9HCI6 787 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 INTS13Q9NVM9 706 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 SIX4Q9UIU6 781 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 POLIQ9UNA4 740 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 AGAP1Q9UPQ3 857 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 CACNA1HO95180 2353 aa16.23■□□□□ 0.19
VPS39-210ENST00000568357 PDCD11Q14690 1871 aaKnown RBP16.22■□□□□ 0.19
VPS39-210ENST00000568357 KPNA7A9QM74 516 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 VNN2O95498 520 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 CYP11A1P05108 521 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 ODC1P11926 461 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 ELF1P32519 619 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 ADCY1Q08828 1119 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 SNW1Q13573 536 aaKnown RBP16.22■□□□□ 0.19
VPS39-210ENST00000568357 PTPN21Q16825 1174 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 RTL10Q7L3V2 364 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 C12orf56Q8IXR9 622 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 XXYLT1Q8NBI6 393 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 ENGASEQ8NFI3 743 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 ACSF2Q96CM8 615 aaPredicted RBP16.22■□□□□ 0.19
VPS39-210ENST00000568357 ASIC4Q96FT7 647 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 MYADMQ96S97 322 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 TMEM209Q96SK2 561 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 MTMR12Q9C0I1 747 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 KCTD10Q9H3F6 313 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 CYP4F11Q9HBI6 524 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 HCFC1R1Q9NWW0 138 aa16.22■□□□□ 0.19
VPS39-210ENST00000568357 CGNQ9P2M7 1197 aaKnown RBP16.22■□□□□ 0.19
VPS39-210ENST00000568357 DNMT3BQ9UBC3 853 aaKnown RBP16.22■□□□□ 0.19
VPS39-210ENST00000568357 ARHGEF37A1IGU5 675 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 GOLGA6L4A6NEF3 574 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 OR6C75A6NL08 312 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 PRRG1O14668 218 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 XYLBO75191 536 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 RHOBTB3O94955 611 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 POU2F2P09086 479 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 CPB1P15086 417 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 AVPR2P30518 371 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 GBP2P32456 591 aaPredicted RBP16.21■□□□□ 0.19
VPS39-210ENST00000568357 SIGLEC14Q08ET2 396 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 SURF1Q15526 300 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 WSCD1Q658N2 575 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 OR10T2Q8NGX3 314 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 CCDC127Q96BQ5 260 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 RTP3Q9BQQ7 232 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 OXCT2Q9BYC2 517 aaPredicted RBP16.21■□□□□ 0.19
VPS39-210ENST00000568357 GZF1Q9H116 711 aaPredicted RBP16.21■□□□□ 0.19
VPS39-210ENST00000568357 SMOC2Q9H3U7 446 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 DMAC2Q9NW81 257 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 AFF4Q9UHB7 1163 aaKnown RBP16.21■□□□□ 0.19
VPS39-210ENST00000568357 ITGA11Q9UKX5 1188 aa16.21■□□□□ 0.19
VPS39-210ENST00000568357 PRR23AA6NEV1 266 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 PROB1E7EW31 1015 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 KRT19P08727 400 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 FSHRP23945 695 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 PNPLA4P41247 253 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 RBP5P82980 135 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 CYP24A1Q07973 514 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 GPR17Q13304 367 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 PSMD6Q15008 389 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 DUOXA2Q1HG44 320 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 SV2CQ496J9 727 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 ERMP1Q7Z2K6 904 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 ZNF560Q96MR9 790 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 PGLYRP2Q96PD5 576 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 CRISPLD1Q9H336 500 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.2■□□□□ 0.18
VPS39-210ENST00000568357 EPS15L1Q9UBC2 864 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 DSEQ9UL01 958 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 MAFFQ9ULX9 164 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 MAPK8IP1Q9UQF2 711 aa16.2■□□□□ 0.18
VPS39-210ENST00000568357 ANK1P16157 1881 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 PDXKO00764 312 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 EXOC3O60645 756 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 PDGFBP01127 241 aaPredicted RBP16.19■□□□□ 0.18
VPS39-210ENST00000568357 TMEM191BP0C7N4 346 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 DLATP10515 647 aaKnown RBP16.19■□□□□ 0.18
VPS39-210ENST00000568357 LAMP2P13473 410 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms