RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 C2CD2Q9Y426 696 aa17.43■□□□□ 0.38
CLN3-229ENST00000567963 DCHS1Q96JQ0 3298 aa17.43■□□□□ 0.38
CLN3-229ENST00000567963 SHISA7A6NL88 538 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 ODC1P11926 461 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 SYT1P21579 422 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 MAGEA9P43362 315 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 POU5F1Q01860 360 aaKnown RBP17.42■□□□□ 0.38
CLN3-229ENST00000567963 RESTQ13127 1097 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 PLD1Q13393 1074 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 FAM173BQ6P4H8 233 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 ZC3H14Q6PJT7 736 aaKnown RBP17.42■□□□□ 0.38
CLN3-229ENST00000567963 ZNF852Q6ZMS4 543 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 SFR1Q86XK3 245 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 KCNG4Q8TDN1 519 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 DNASE1L2Q92874 299 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 CLDN23Q96B33 292 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 TMEM209Q96SK2 561 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 STRA6Q9BX79 667 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 GPR88Q9GZN0 384 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 DNAJC25Q9H1X3 360 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 BRD9Q9H8M2 597 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 TRPV4Q9HBA0 871 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 SLC27A5Q9Y2P5 690 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 FANCMQ8IYD8 2048 aa17.42■□□□□ 0.38
CLN3-229ENST00000567963 SCN1AP35498 2009 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 MTMR11A4FU01 709 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 MYMKA6NI61 221 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 NCAM2O15394 837 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 PPP1R37O75864 691 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 CYP11A1P05108 521 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 PSMC3P17980 439 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 TARSP26639 723 aaKnown RBP17.41■□□□□ 0.38
CLN3-229ENST00000567963 ADSSP30520 456 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 ALDH1A3P47895 512 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 EPHB3P54753 998 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 CEBPZQ03701 1054 aaKnown RBP17.41■□□□□ 0.38
CLN3-229ENST00000567963 TEAD2Q15562 447 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 RRAGBQ5VZM2 374 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 ARMCX5Q6P1M9 558 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 CRELD2Q6UXH1 353 aaPredicted RBP17.41■□□□□ 0.38
CLN3-229ENST00000567963 VITQ6UXI7 678 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 SV2BQ7L1I2 683 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 TMC8Q8IU68 726 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 ATAD1Q8NBU5 361 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 ZSCAN18Q8TBC5 510 aaPredicted RBP17.41■□□□□ 0.38
CLN3-229ENST00000567963 IRF7Q92985 503 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 HVCN1Q96D96 273 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 DNAJC19Q96DA6 116 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 IKZF4Q9H2S9 585 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 TRPV5Q9NQA5 729 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 SPATA6Q9NWH7 488 aaPredicted RBP17.41■□□□□ 0.38
CLN3-229ENST00000567963 SEL1LQ9UBV2 794 aa17.41■□□□□ 0.38
CLN3-229ENST00000567963 LAMTOR5O43504 91 aa17.4■□□□□ 0.38
CLN3-229ENST00000567963 TXLNAP40222 546 aa17.4■□□□□ 0.38
CLN3-229ENST00000567963 VIPR2P41587 438 aa17.4■□□□□ 0.38
CLN3-229ENST00000567963 FZD5Q13467 585 aa17.4■□□□□ 0.38
CLN3-229ENST00000567963 POSTNQ15063 836 aa17.4■□□□□ 0.38
CLN3-229ENST00000567963 ZNF528Q3MIS6 628 aa17.4■□□□□ 0.38
CLN3-229ENST00000567963 SHKBP1Q8TBC3 707 aa17.4■□□□□ 0.38
CLN3-229ENST00000567963 POMGNT1Q8WZA1 660 aa17.4■□□□□ 0.38
CLN3-229ENST00000567963 MRPL44Q9H9J2 332 aaKnown RBP17.4■□□□□ 0.38
CLN3-229ENST00000567963 ZNF334Q9HCZ1 680 aaPredicted RBP17.4■□□□□ 0.38
CLN3-229ENST00000567963 DPP3Q9NY33 737 aa17.4■□□□□ 0.38
CLN3-229ENST00000567963 HSFX1Q9UBD0 423 aa17.4■□□□□ 0.38
CLN3-229ENST00000567963 FBXO4Q9UKT5 387 aa17.4■□□□□ 0.38
CLN3-229ENST00000567963 MRPS17Q9Y2R5 130 aaKnown RBP17.4■□□□□ 0.38
CLN3-229ENST00000567963 PATJQ8NI35 1801 aa17.4■□□□□ 0.38
CLN3-229ENST00000567963 A0A1W2PRU2 124 aa17.39■□□□□ 0.37
CLN3-229ENST00000567963 GDI1P31150 447 aa17.39■□□□□ 0.37
CLN3-229ENST00000567963 RPS9P46781 194 aaKnown RBP17.39■□□□□ 0.37
CLN3-229ENST00000567963 KCNA1Q09470 495 aa17.39■□□□□ 0.37
CLN3-229ENST00000567963 MFSD6LQ8IWD5 586 aa17.39■□□□□ 0.37
CLN3-229ENST00000567963 TTC9BQ8N6N2 239 aa17.39■□□□□ 0.37
CLN3-229ENST00000567963 OR10T2Q8NGX3 314 aa17.39■□□□□ 0.37
CLN3-229ENST00000567963 DEPDC1BQ8WUY9 529 aa17.39■□□□□ 0.37
CLN3-229ENST00000567963 PSMG2Q969U7 264 aa17.39■□□□□ 0.37
CLN3-229ENST00000567963 INTS4Q96HW7 963 aaKnown RBP17.39■□□□□ 0.37
CLN3-229ENST00000567963 SLITRK6Q9H5Y7 841 aa17.39■□□□□ 0.37
CLN3-229ENST00000567963 TBC1D7Q9P0N9 293 aa17.39■□□□□ 0.37
CLN3-229ENST00000567963 DSEQ9UL01 958 aa17.39■□□□□ 0.37
CLN3-229ENST00000567963 ASB3Q9Y575 518 aa17.39■□□□□ 0.37
CLN3-229ENST00000567963 TSC2P49815 1807 aa17.39■□□□□ 0.37
CLN3-229ENST00000567963 MAN2B1O00754 1011 aa17.38■□□□□ 0.37
CLN3-229ENST00000567963 CYB561D2O14569 222 aa17.38■□□□□ 0.37
CLN3-229ENST00000567963 GAP43P17677 238 aa17.38■□□□□ 0.37
CLN3-229ENST00000567963 TAF6P49848 677 aa17.38■□□□□ 0.37
CLN3-229ENST00000567963 SLC39A14Q15043 492 aa17.38■□□□□ 0.37
CLN3-229ENST00000567963 DNAJB7Q7Z6W7 309 aaPredicted RBP17.38■□□□□ 0.37
CLN3-229ENST00000567963 EFCAB13Q8IY85 973 aa17.38■□□□□ 0.37
CLN3-229ENST00000567963 ZNF687Q8N1G0 1237 aa17.38■□□□□ 0.37
CLN3-229ENST00000567963 E2F7Q96AV8 911 aa17.38■□□□□ 0.37
CLN3-229ENST00000567963 BORCS6Q96GS4 357 aa17.38■□□□□ 0.37
CLN3-229ENST00000567963 ZCWPW1Q9H0M4 648 aa17.38■□□□□ 0.37
CLN3-229ENST00000567963 EXOC7Q9UPT5 735 aa17.38■□□□□ 0.37
CLN3-229ENST00000567963 MORC2Q9Y6X9 1032 aaPredicted RBP17.38■□□□□ 0.37
CLN3-229ENST00000567963 NCANO14594 1321 aa17.38■□□□□ 0.37
CLN3-229ENST00000567963 ZNF292O60281 2723 aa17.38■□□□□ 0.37
CLN3-229ENST00000567963 HEPACAM2A8MVW5 462 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 ZNF263O14978 683 aa17.37■□□□□ 0.37
CLN3-229ENST00000567963 SOAT2O75908 522 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms