RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 TBC1D7Q9P0N9 293 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 ODF2LQ9ULJ1 636 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 GIT1Q9Y2X7 761 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 PCDHA5Q9Y5H7 936 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 PIAS3Q9Y6X2 628 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 TICRRQ7Z2Z1 1910 aa12.34□□□□□ -0.43
CLN3-226ENST00000567160 SRRM3A6NNA2 597 aaPredicted RBP12.33□□□□□ -0.44
CLN3-226ENST00000567160 AXIN1O15169 862 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 KLRC4O43908 158 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 SMC2O95347 1197 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 GLRA2P23416 452 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 ARL2P36404 184 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 PEX3P56589 373 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 LAMTOR4Q0VGL1 99 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 FOXC1Q12948 553 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 GRIK3Q13003 919 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 HSP90AA2PQ14568 343 aaPredicted RBP12.33□□□□□ -0.44
CLN3-226ENST00000567160 KMT5BQ4FZB7 885 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 RTP2Q5QGT7 225 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 HEATR6Q6AI08 1181 aaKnown RBP12.33□□□□□ -0.44
CLN3-226ENST00000567160 ISM2Q6H9L7 571 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 TANGO2Q6ICL3 276 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 NOTUMQ6P988 496 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 UNC13DQ70J99 1090 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 CEP57Q86XR8 500 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 ELOA2Q8IYF1 753 aaPredicted RBP12.33□□□□□ -0.44
CLN3-226ENST00000567160 PRPF31Q8WWY3 499 aaKnown RBP12.33□□□□□ -0.44
CLN3-226ENST00000567160 HPS3Q969F9 1004 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 CCDC47Q96A33 483 aaKnown RBP12.33□□□□□ -0.44
CLN3-226ENST00000567160 MSANTD3Q96H12 275 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 PARVGQ9HBI0 331 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 EXOC1Q9NV70 894 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 HCFC1R1Q9NWW0 138 aa12.33□□□□□ -0.44
CLN3-226ENST00000567160 DNMT3BQ9UBC3 853 aaKnown RBP12.33□□□□□ -0.44
CLN3-226ENST00000567160 ZMYM2Q9UBW7 1377 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 SETXQ7Z333 2677 aaKnown RBP12.32□□□□□ -0.44
CLN3-226ENST00000567160 PVALEFA0A1B0GWK0 134 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 LRRIQ4A6NIV6 560 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 CCDC169A6NNP5 214 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 BIN1O00499 593 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 EPN2O95208 641 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 RHOP08100 348 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 SRGAP2CP0DJJ0 459 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 CHRNB1P11230 501 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 PLS3P13797 630 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 GAP43P17677 238 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 HOXA6P31267 233 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 NOVA1P51513 510 aaKnown RBP12.32□□□□□ -0.44
CLN3-226ENST00000567160 ZNF131P52739 623 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 RING1Q06587 406 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 ELAVL2Q12926 359 aaKnown RBP12.32□□□□□ -0.44
CLN3-226ENST00000567160 CAPSQ13938 189 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 GRM2Q14416 872 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 RNF43Q68DV7 783 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 CACNA2D4Q7Z3S7 1137 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 IFT74Q96LB3 600 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 KIFC3Q9BVG8 833 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 APOL6Q9BWW8 343 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 ZNF334Q9HCZ1 680 aaPredicted RBP12.32□□□□□ -0.44
CLN3-226ENST00000567160 AVENQ9NQS1 362 aaPredicted RBP12.32□□□□□ -0.44
CLN3-226ENST00000567160 MIOSQ9NXC5 875 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 KIAA1468Q9P260 1216 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 PCDHGA5Q9Y5G8 931 aa12.32□□□□□ -0.44
CLN3-226ENST00000567160 PDCD11Q14690 1871 aaKnown RBP12.31□□□□□ -0.44
CLN3-226ENST00000567160 COL4A2P08572 1712 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 FRMD3A2A2Y4 597 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 K7ESF4 209 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 ZNF197O14709 1029 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 SLC16A4O15374 487 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 ASAP2O43150 1006 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 PSMC3P17980 439 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 NMT1P30419 496 aaKnown RBP12.31□□□□□ -0.44
CLN3-226ENST00000567160 NPTX2P47972 431 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 MLLT6P55198 1093 aaPredicted RBP12.31□□□□□ -0.44
CLN3-226ENST00000567160 ZNF252P-AS1Q0IIN9 211 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 DMP1Q13316 513 aaPredicted RBP12.31□□□□□ -0.44
CLN3-226ENST00000567160 RAB33AQ14088 237 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 MXD4Q14582 209 aaPredicted RBP12.31□□□□□ -0.44
CLN3-226ENST00000567160 PPP2R5AQ15172 486 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 FAM171A1Q5VUB5 890 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 WDR5BQ86VZ2 330 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 RNF149Q8NC42 400 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 DEPTORQ8TB45 409 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 LNX1Q8TBB1 728 aaPredicted RBP12.31□□□□□ -0.44
CLN3-226ENST00000567160 DEPDC1BQ8WUY9 529 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 ZCCHC14Q8WYQ9 949 aaKnown RBP12.31□□□□□ -0.44
CLN3-226ENST00000567160 KIF12Q96FN5 646 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 EIF2AQ9BY44 585 aaKnown RBP12.31□□□□□ -0.44
CLN3-226ENST00000567160 RNF39Q9H2S5 420 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 MINDY3Q9H8M7 445 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 MRPL44Q9H9J2 332 aaKnown RBP12.31□□□□□ -0.44
CLN3-226ENST00000567160 KMT5AQ9NQR1 393 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 VPS45Q9NRW7 570 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 RXFP3Q9NSD7 469 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 RMND1Q9NWS8 449 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 LARSQ9P2J5 1176 aaKnown RBP12.31□□□□□ -0.44
CLN3-226ENST00000567160 MAN1B1Q9UKM7 699 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 HES2Q9Y543 173 aa12.31□□□□□ -0.44
CLN3-226ENST00000567160 K7ENM7 598 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 ZNF263O14978 683 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms