RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 PTPAQ15257 358 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 ZC2HC1CQ53FD0 456 aaPredicted RBP20.29■□□□□ 0.84
CLN3-218ENST00000565688 C9orf57Q5W0N0 161 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 DEPDC1BQ8WUY9 529 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 E2F7Q96AV8 911 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 CLDN23Q96B33 292 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 SENP8Q96LD8 212 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 ZSWIM3Q96MP5 696 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 PGLYRP2Q96PD5 576 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 TRPV5Q9NQA5 729 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 HSFX1Q9UBD0 423 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 SEL1LQ9UBV2 794 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 AGO2Q9UKV8 859 aaKnown RBP20.29■□□□□ 0.84
CLN3-218ENST00000565688 DSEQ9UL01 958 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 ASB3Q9Y575 518 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 SRPRBQ9Y5M8 271 aaKnown RBP20.29■□□□□ 0.84
CLN3-218ENST00000565688 CLIC4Q9Y696 253 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 ANO9A1A5B4 782 aa20.28■□□□□ 0.84
CLN3-218ENST00000565688 ANKRD63C9JTQ0 380 aa20.28■□□□□ 0.84
CLN3-218ENST00000565688 PIRO00625 290 aa20.28■□□□□ 0.84
CLN3-218ENST00000565688 PPEF2O14830 753 aa20.28■□□□□ 0.84
CLN3-218ENST00000565688 VNN2O95498 520 aa20.28■□□□□ 0.84
CLN3-218ENST00000565688 NFICP08651 508 aa20.28■□□□□ 0.84
CLN3-218ENST00000565688 GRM2Q14416 872 aa20.28■□□□□ 0.84
CLN3-218ENST00000565688 POSTNQ15063 836 aa20.28■□□□□ 0.84
CLN3-218ENST00000565688 CENPPQ6IPU0 288 aa20.28■□□□□ 0.84
CLN3-218ENST00000565688 ZNF720Q7Z2F6 126 aa20.28■□□□□ 0.84
CLN3-218ENST00000565688 MAML2Q8IZL2 1156 aaPredicted RBP20.28■□□□□ 0.84
CLN3-218ENST00000565688 ZSCAN18Q8TBC5 510 aaPredicted RBP20.28■□□□□ 0.84
CLN3-218ENST00000565688 SLITRK6Q9H5Y7 841 aa20.28■□□□□ 0.84
CLN3-218ENST00000565688 FBXO2Q9UK22 296 aaPredicted RBP20.28■□□□□ 0.84
CLN3-218ENST00000565688 CACNA1IQ9P0X4 2223 aa20.28■□□□□ 0.84
CLN3-218ENST00000565688 FGF19O95750 216 aa20.27■□□□□ 0.84
CLN3-218ENST00000565688 CYP11A1P05108 521 aa20.27■□□□□ 0.84
CLN3-218ENST00000565688 GAP43P17677 238 aa20.27■□□□□ 0.84
CLN3-218ENST00000565688 TARSP26639 723 aaKnown RBP20.27■□□□□ 0.84
CLN3-218ENST00000565688 TEAD2Q15562 447 aa20.27■□□□□ 0.84
CLN3-218ENST00000565688 RRAGBQ5VZM2 374 aa20.27■□□□□ 0.84
CLN3-218ENST00000565688 VITQ6UXI7 678 aa20.27■□□□□ 0.84
CLN3-218ENST00000565688 USP49Q70CQ1 688 aa20.27■□□□□ 0.84
CLN3-218ENST00000565688 SV2BQ7L1I2 683 aa20.27■□□□□ 0.84
CLN3-218ENST00000565688 DYMQ7RTS9 669 aa20.27■□□□□ 0.84
CLN3-218ENST00000565688 SFR1Q86XK3 245 aa20.27■□□□□ 0.84
CLN3-218ENST00000565688 SHKBP1Q8TBC3 707 aa20.27■□□□□ 0.84
CLN3-218ENST00000565688 EXOC7Q9UPT5 735 aa20.27■□□□□ 0.84
CLN3-218ENST00000565688 COL4A3Q01955 1670 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 MTMR11A4FU01 709 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 NRG2O14511 850 aaPredicted RBP20.26■□□□□ 0.83
CLN3-218ENST00000565688 SPTLC1O15269 473 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 IL18RAPO95256 599 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 GJA1P17302 382 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 GDI1P31150 447 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 FOXK2Q01167 660 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 ITIH5Q86UX2 942 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 METTL23Q86XA0 190 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 NT5DC4Q86YG4 428 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 TMC8Q8IU68 726 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 MFSD6LQ8IWD5 586 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 ATAD1Q8NBU5 361 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 POMGNT1Q8WZA1 660 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 LRRC3Q9BY71 257 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 DNAJC25Q9H1X3 360 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 CRISPLD1Q9H336 500 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 MRPL44Q9H9J2 332 aaKnown RBP20.26■□□□□ 0.83
CLN3-218ENST00000565688 ZNF334Q9HCZ1 680 aaPredicted RBP20.26■□□□□ 0.83
CLN3-218ENST00000565688 DPP3Q9NY33 737 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 SLC27A5Q9Y2P5 690 aa20.26■□□□□ 0.83
CLN3-218ENST00000565688 A0A1W2PRU2 124 aa20.25■□□□□ 0.83
CLN3-218ENST00000565688 TISP43B9A030 160 aa20.25■□□□□ 0.83
CLN3-218ENST00000565688 ZNF263O14978 683 aa20.25■□□□□ 0.83
CLN3-218ENST00000565688 KINO60870 393 aaKnown RBP20.25■□□□□ 0.83
CLN3-218ENST00000565688 PPP1R37O75864 691 aa20.25■□□□□ 0.83
CLN3-218ENST00000565688 SYT1P21579 422 aa20.25■□□□□ 0.83
CLN3-218ENST00000565688 VIPR2P41587 438 aa20.25■□□□□ 0.83
CLN3-218ENST00000565688 TUFMP49411 452 aaKnown RBP20.25■□□□□ 0.83
CLN3-218ENST00000565688 TAF6P49848 677 aa20.25■□□□□ 0.83
CLN3-218ENST00000565688 CSTF1Q05048 431 aaKnown RBP20.25■□□□□ 0.83
CLN3-218ENST00000565688 RESTQ13127 1097 aa20.25■□□□□ 0.83
CLN3-218ENST00000565688 CCDC73Q6ZRK6 1079 aa20.25■□□□□ 0.83
CLN3-218ENST00000565688 PSMG2Q969U7 264 aa20.25■□□□□ 0.83
CLN3-218ENST00000565688 STRA6Q9BX79 667 aa20.25■□□□□ 0.83
CLN3-218ENST00000565688 PCDHGA2Q9Y5H1 932 aa20.25■□□□□ 0.83
CLN3-218ENST00000565688 MORC2Q9Y6X9 1032 aaPredicted RBP20.25■□□□□ 0.83
CLN3-218ENST00000565688 HEPACAM2A8MVW5 462 aa20.24■□□□□ 0.83
CLN3-218ENST00000565688 CYB561D2O14569 222 aa20.24■□□□□ 0.83
CLN3-218ENST00000565688 MLLT6P55198 1093 aaPredicted RBP20.24■□□□□ 0.83
CLN3-218ENST00000565688 SMARCB1Q12824 385 aa20.24■□□□□ 0.83
CLN3-218ENST00000565688 DNAJB7Q7Z6W7 309 aaPredicted RBP20.24■□□□□ 0.83
CLN3-218ENST00000565688 YAF2Q8IY57 180 aa20.24■□□□□ 0.83
CLN3-218ENST00000565688 THEM5Q8N1Q8 247 aa20.24■□□□□ 0.83
CLN3-218ENST00000565688 OR10T2Q8NGX3 314 aa20.24■□□□□ 0.83
CLN3-218ENST00000565688 C2orf15Q8WU43 125 aaKnown RBP20.24■□□□□ 0.83
CLN3-218ENST00000565688 INTS4Q96HW7 963 aaKnown RBP20.24■□□□□ 0.83
CLN3-218ENST00000565688 ACCSQ96QU6 501 aa20.24■□□□□ 0.83
CLN3-218ENST00000565688 IER2Q9BTL4 223 aa20.24■□□□□ 0.83
CLN3-218ENST00000565688 ZCWPW1Q9H0M4 648 aa20.24■□□□□ 0.83
CLN3-218ENST00000565688 PCDHB13Q9Y5F0 798 aa20.24■□□□□ 0.83
CLN3-218ENST00000565688 PIAS3Q9Y6X2 628 aa20.24■□□□□ 0.83
CLN3-218ENST00000565688 PATJQ8NI35 1801 aa20.24■□□□□ 0.83
CLN3-218ENST00000565688 FANCMQ8IYD8 2048 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms