RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 C1orf127Q8N9H9 656 aa19.86■□□□□ 0.77
CLN3-214ENST00000565140 CXorf38Q8TB03 319 aa19.86■□□□□ 0.77
CLN3-214ENST00000565140 PGLYRP2Q96PD5 576 aa19.86■□□□□ 0.77
CLN3-214ENST00000565140 PYM1Q9BRP8 204 aaKnown RBP19.86■□□□□ 0.77
CLN3-214ENST00000565140 CRISPLD1Q9H336 500 aa19.86■□□□□ 0.77
CLN3-214ENST00000565140 SLC39A2Q9NP94 309 aa19.86■□□□□ 0.77
CLN3-214ENST00000565140 HSPBP1Q9NZL4 362 aa19.86■□□□□ 0.77
CLN3-214ENST00000565140 DUSP12Q9UNI6 340 aa19.86■□□□□ 0.77
CLN3-214ENST00000565140 HPSEQ9Y251 543 aa19.86■□□□□ 0.77
CLN3-214ENST00000565140 ZFP37Q9Y6Q3 630 aaPredicted RBP19.86■□□□□ 0.77
CLN3-214ENST00000565140 OR6C75A6NL08 312 aa19.85■□□□□ 0.77
CLN3-214ENST00000565140 CYB561D2O14569 222 aa19.85■□□□□ 0.77
CLN3-214ENST00000565140 KLRC4O43908 158 aa19.85■□□□□ 0.77
CLN3-214ENST00000565140 PTPN2P17706 415 aa19.85■□□□□ 0.77
CLN3-214ENST00000565140 VCPP55072 806 aaKnown RBP19.85■□□□□ 0.77
CLN3-214ENST00000565140 IER5LQ5T953 404 aa19.85■□□□□ 0.77
CLN3-214ENST00000565140 CBWD2Q8IUF1 395 aa19.85■□□□□ 0.77
CLN3-214ENST00000565140 NELFCDQ8IXH7 590 aa19.85■□□□□ 0.77
CLN3-214ENST00000565140 OR10T2Q8NGX3 314 aa19.85■□□□□ 0.77
CLN3-214ENST00000565140 ING5Q8WYH8 240 aa19.85■□□□□ 0.77
CLN3-214ENST00000565140 FGF14Q92915 247 aa19.85■□□□□ 0.77
CLN3-214ENST00000565140 RTP3Q9BQQ7 232 aa19.85■□□□□ 0.77
CLN3-214ENST00000565140 RPP25Q9BUL9 199 aaKnown RBP19.85■□□□□ 0.77
CLN3-214ENST00000565140 OXCT2Q9BYC2 517 aaPredicted RBP19.85■□□□□ 0.77
CLN3-214ENST00000565140 CEP72Q9P209 647 aa19.85■□□□□ 0.77
CLN3-214ENST00000565140 MAFFQ9ULX9 164 aa19.85■□□□□ 0.77
CLN3-214ENST00000565140 PTPRJQ12913 1337 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 KPNA7A9QM74 516 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 NRG2O14511 850 aaPredicted RBP19.84■□□□□ 0.77
CLN3-214ENST00000565140 KIAA0391O15091 583 aaKnown RBP19.84■□□□□ 0.77
CLN3-214ENST00000565140 CLIC2O15247 247 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 ITGB3P05106 788 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 POLR2BP30876 1174 aaKnown RBP19.84■□□□□ 0.77
CLN3-214ENST00000565140 NDUFA8P51970 172 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 TWF1Q12792 350 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 DUSP4Q13115 394 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 GPR17Q13304 367 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 MYBPC2Q14324 1141 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 LMBRD2Q68DH5 695 aaPredicted RBP19.84■□□□□ 0.77
CLN3-214ENST00000565140 PARM1Q6UWI2 310 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 SUGP1Q8IWZ8 645 aaKnown RBP19.84■□□□□ 0.77
CLN3-214ENST00000565140 NPAS3Q8IXF0 933 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 CACTINQ8WUQ7 758 aaKnown RBP19.84■□□□□ 0.77
CLN3-214ENST00000565140 NXPE3Q969Y0 559 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 CORO1BQ9BR76 489 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 AVENQ9NQS1 362 aaPredicted RBP19.84■□□□□ 0.77
CLN3-214ENST00000565140 AGPAT3Q9NRZ7 376 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 AGAP1Q9UPQ3 857 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 MRPS23Q9Y3D9 190 aaKnown RBP19.84■□□□□ 0.77
CLN3-214ENST00000565140 NUMBLQ9Y6R0 609 aa19.84■□□□□ 0.77
CLN3-214ENST00000565140 UBE4BO95155 1302 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 ZNF233A6NK53 670 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 CDR1P51861 262 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 BMT2Q1RMZ1 405 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 SV2CQ496J9 727 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 PRSS36Q5K4E3 855 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 WSCD1Q658N2 575 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 CENPPQ6IPU0 288 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 HS6ST3Q8IZP7 471 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 CSGALNACT2Q8N6G5 542 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 RDH13Q8NBN7 331 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 ATAD1Q8NBU5 361 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 TCEAL4Q96EI5 215 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 MTMR12Q9C0I1 747 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 GDPD2Q9HCC8 539 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 SIX4Q9UIU6 781 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 SLC27A5Q9Y2P5 690 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 ATP6V1DQ9Y5K8 247 aa19.83■□□□□ 0.77
CLN3-214ENST00000565140 CACNA1HO95180 2353 aa19.83■□□□□ 0.76
CLN3-214ENST00000565140 FAM237AA0A1B0GTK4 181 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 MTMR11A4FU01 709 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 CFHP08603 1231 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 CEBPBP17676 345 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 AVPR2P30518 371 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 PLA2G5P39877 138 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 CCR2P41597 374 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 STK4Q13043 487 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 BECN1Q14457 450 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 TTC9BQ8N6N2 239 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 OR5B17Q8NGF7 314 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 MCRS1Q96EZ8 462 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 SCAND2PQ9GZW5 306 aaPredicted RBP19.82■□□□□ 0.76
CLN3-214ENST00000565140 ZCWPW1Q9H0M4 648 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 INTS13Q9NVM9 706 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 USP25Q9UHP3 1055 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 ITGA11Q9UKX5 1188 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 DSEQ9UL01 958 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 YIPF1Q9Y548 306 aa19.82■□□□□ 0.76
CLN3-214ENST00000565140 PNPLA4P41247 253 aa19.81■□□□□ 0.76
CLN3-214ENST00000565140 SYKP43405 635 aa19.81■□□□□ 0.76
CLN3-214ENST00000565140 CYP2J2P51589 502 aa19.81■□□□□ 0.76
CLN3-214ENST00000565140 KMT5BQ4FZB7 885 aa19.81■□□□□ 0.76
CLN3-214ENST00000565140 LRRTM3Q86VH5 581 aa19.81■□□□□ 0.76
CLN3-214ENST00000565140 METTL23Q86XA0 190 aa19.81■□□□□ 0.76
CLN3-214ENST00000565140 KIAA0895Q8NCT3 520 aa19.81■□□□□ 0.76
CLN3-214ENST00000565140 FAM122AQ96E09 287 aa19.81■□□□□ 0.76
CLN3-214ENST00000565140 ZNF512Q96ME7 567 aaPredicted RBP19.81■□□□□ 0.76
CLN3-214ENST00000565140 ZNF560Q96MR9 790 aa19.81■□□□□ 0.76
CLN3-214ENST00000565140 GOLPH3LQ9H4A5 285 aa19.81■□□□□ 0.76
CLN3-214ENST00000565140 KIAA1586Q9HCI6 787 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms