RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TCF7L2Q9NQB0 619 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 NCDNQ9UBB6 729 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 RSPH14Q9UHP6 348 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 PRSS50Q9UI38 385 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 CECR2Q9BXF3 1484 aa5.68□□□□□ -1.5
VPS35-205ENST00000563984 C2orf81A6NN90 581 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 TBKBP1A7MCY6 615 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 TSPAN6O43657 245 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 BRINP1O60477 761 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 OFD1O75665 1012 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 ALDH1A2O94788 518 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 USP8P40818 1118 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 BPIFB3P59826 476 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 DDX10Q13206 875 aaKnown RBP5.67□□□□□ -1.5
VPS35-205ENST00000563984 FHL2Q14192 279 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 RBBP5Q15291 538 aaKnown RBP5.67□□□□□ -1.5
VPS35-205ENST00000563984 SF3B3Q15393 1217 aaKnown RBP5.67□□□□□ -1.5
VPS35-205ENST00000563984 PUM3Q15397 648 aaKnown RBP5.67□□□□□ -1.5
VPS35-205ENST00000563984 ELAVL1Q15717 326 aaKnown RBP5.67□□□□□ -1.5
VPS35-205ENST00000563984 BRDTQ58F21 947 aaPredicted RBP5.67□□□□□ -1.5
VPS35-205ENST00000563984 ARMC4Q5T2S8 1044 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 HHATQ5VTY9 493 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 CCDC30Q5VVM6 783 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 PPP4R3AQ6IN85 833 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 CFAP161Q6P656 301 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 LMBR1LQ6UX01 489 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 UNC5DQ6UXZ4 953 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 KSR2Q6VAB6 950 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 PACS1Q6VY07 963 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 BEND5Q7L4P6 421 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 RASGRP2Q7LDG7 609 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 TAS1R1Q7RTX1 841 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 TMPRSS6Q8IU80 811 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 GLB1L2Q8IW92 636 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 ZNF713Q8N859 430 aaPredicted RBP5.67□□□□□ -1.5
VPS35-205ENST00000563984 NKAIN3Q8N8D7 197 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 RASSF8Q8NHQ8 419 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 TEKT4Q8WW24 435 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 CEP95Q96GE4 821 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 PLEKHG4BQ96PX9 1271 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 NAP1L3Q99457 506 aaPredicted RBP5.67□□□□□ -1.5
VPS35-205ENST00000563984 FDXACB1Q9BRP7 624 aaPredicted RBP5.67□□□□□ -1.5
VPS35-205ENST00000563984 SLC7A5P2Q9GIP4 190 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 DNAI2Q9GZS0 605 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 TAOK3Q9H2K8 898 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 ING3Q9NXR8 418 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 LUZP4Q9P127 313 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 EPS15L1Q9UBC2 864 aa5.67□□□□□ -1.5
VPS35-205ENST00000563984 HECAQ9UBI9 543 aaPredicted RBP5.67□□□□□ -1.5
VPS35-205ENST00000563984 A0A0B4J203 849 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 LINC00854A0A1B0GVQ3 168 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 NEMFO60524 1076 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 SKAP2O75563 359 aaPredicted RBP5.66□□□□□ -1.5
VPS35-205ENST00000563984 IPO13O94829 963 aaKnown RBP5.66□□□□□ -1.5
VPS35-205ENST00000563984 ARIH2O95376 493 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 C1SP09871 688 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 CPEP16870 476 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 TRIM21P19474 475 aaKnown RBP5.66□□□□□ -1.5
VPS35-205ENST00000563984 ADD2P35612 726 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 UBA7P41226 1012 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 ID4P47928 161 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 WNT3AP56704 352 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 PTH1RQ03431 593 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 PPARAQ07869 468 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 CRHR2Q13324 411 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 MORC3Q14149 939 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 RRP1BQ14684 758 aaKnown RBP5.66□□□□□ -1.5
VPS35-205ENST00000563984 ARHGEF6Q15052 776 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 SLC5A9Q2M3M2 681 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 SPDYCQ5MJ68 293 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 ANO1Q5XXA6 986 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 CCDC62Q6P9F0 684 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 FIP1L1Q6UN15 594 aaKnown RBP5.66□□□□□ -1.5
VPS35-205ENST00000563984 NEK10Q6ZWH5 1172 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 STRA8Q7Z7C7 330 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 SRLQ86TD4 932 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 LYSMD2Q8IV50 215 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 SLC41A1Q8IVJ1 513 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 OR8H2Q8N162 312 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 UBR7Q8N806 425 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 CCDC26Q8TAB7 109 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 SUN5Q8TC36 379 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 KIAA1524Q8TCG1 905 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 MIPOL1Q8TD10 442 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 AFAP1L1Q8TED9 768 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS35-205ENST00000563984 ZNF75CPQ92670 426 aaPredicted RBP5.66□□□□□ -1.5
VPS35-205ENST00000563984 ATP6V1E2Q96A05 226 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 ZNF512Q96ME7 567 aaPredicted RBP5.66□□□□□ -1.5
VPS35-205ENST00000563984 ACAP3Q96P50 834 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 AP1M1Q9BXS5 423 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 TRIM8Q9BZR9 551 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 ENKD1Q9H0I2 346 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 OSBPL5Q9H0X9 879 aaPredicted RBP5.66□□□□□ -1.5
VPS35-205ENST00000563984 PARPBPQ9NWS1 579 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 KCTD5Q9NXV2 234 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 TBC1D7Q9P0N9 293 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 CTNNA3Q9UI47 895 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 RNF123Q5XPI4 1314 aa5.66□□□□□ -1.5
VPS35-205ENST00000563984 A0A1W2PR48 441 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms