RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 MXI1P50539 228 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 APBA1Q02410 837 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 ENPEPQ07075 957 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 DLX2Q07687 328 aaPredicted RBP10.53□□□□□ -0.72
CLK3-208ENST00000562626 NCOA4Q13772 614 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 KCNC3Q14003 757 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 MRPL58Q14197 206 aaKnown RBP10.53□□□□□ -0.72
CLK3-208ENST00000562626 SMC1AQ14683 1233 aaKnown RBP10.53□□□□□ -0.72
CLK3-208ENST00000562626 PSMD5Q16401 504 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 SOWAHAQ2M3V2 549 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 USP41Q3LFD5 358 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 MIIPQ5JXC2 388 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 WSCD1Q658N2 575 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 APTXQ7Z2E3 356 aaKnown RBP10.53□□□□□ -0.72
CLK3-208ENST00000562626 LIMS2Q7Z4I7 341 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 LRRC52Q8N7C0 313 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 OR10T2Q8NGX3 314 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 LMO3Q8TAP4 145 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 MICAL1Q8TDZ2 1067 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 KBTBD7Q8WVZ9 684 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 PPM1EQ8WY54 764 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 PIK3R5Q8WYR1 880 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 KLHL5Q96PQ7 755 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 MRPL45Q9BRJ2 306 aaKnown RBP10.53□□□□□ -0.72
CLK3-208ENST00000562626 TTPALQ9BTX7 342 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 THAP9Q9H5L6 903 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 SMYD3Q9H7B4 428 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 CBX8Q9HC52 389 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 TMEM8AQ9HCN3 771 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 PCDHB8Q9UN66 801 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 SNX9Q9Y5X1 595 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 HELZP42694 1942 aaKnown RBP10.52□□□□□ -0.72
CLK3-208ENST00000562626 KCNJ18B7U540 433 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 PHACTR2O75167 634 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 ASS1P00966 412 aaKnown RBP10.52□□□□□ -0.73
CLK3-208ENST00000562626 URODP06132 367 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 EPCAMP16422 314 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 ZNF18P17022 549 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 LTBRP36941 435 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 PIK3CAP42336 1068 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 CDH8P55286 799 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 KCNH2Q12809 1159 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 KCNJ12Q14500 433 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 DUSP6Q16828 381 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 SV2CQ496J9 727 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 CT47A1Q5JQC4 288 aaPredicted RBP10.52□□□□□ -0.73
CLK3-208ENST00000562626 KRT39Q6A163 491 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 DSTYKQ6XUX3 929 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 SCARA5Q6ZMJ2 495 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 LUZP1Q86V48 1076 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 CREBRFQ8IUR6 639 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 PDCL2Q8N4E4 241 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 SLC22A17Q8WUG5 538 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 TATDN2Q93075 761 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 ZNF560Q96MR9 790 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 ARID3AQ99856 593 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 LPIN3Q9BQK8 851 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 BPIFA3Q9BQP9 254 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 NSUN3Q9H649 340 aaKnown RBP10.52□□□□□ -0.73
CLK3-208ENST00000562626 IGFLR1Q9H665 355 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 RXFP1Q9HBX9 757 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 METTL14Q9HCE5 456 aaKnown RBP10.52□□□□□ -0.73
CLK3-208ENST00000562626 NGRNQ9NPE2 291 aaKnown RBP10.52□□□□□ -0.73
CLK3-208ENST00000562626 GDAP2Q9NXN4 497 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 TAB2Q9NYJ8 693 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 LMCD1Q9NZU5 365 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 MTRRQ9UBK8 725 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 NXF1Q9UBU9 619 aaKnown RBP10.52□□□□□ -0.73
CLK3-208ENST00000562626 PUF60Q9UHX1 559 aaKnown RBP10.52□□□□□ -0.73
CLK3-208ENST00000562626 CDH22Q9UJ99 828 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 FBXL5Q9UKA1 691 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 AJAP1Q9UKB5 411 aaPredicted RBP10.52□□□□□ -0.73
CLK3-208ENST00000562626 COQ4Q9Y3A0 265 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 IRAK3Q9Y616 596 aa10.52□□□□□ -0.73
CLK3-208ENST00000562626 MYO10Q9HD67 2058 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 WDR27A2RRH5 827 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 SYN3O14994 580 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 TBX10O75333 385 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 LETM1O95202 739 aaPredicted RBP10.51□□□□□ -0.73
CLK3-208ENST00000562626 STAU1O95793 577 aaKnown RBP10.51□□□□□ -0.73
CLK3-208ENST00000562626 CYP11A1P05108 521 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 SPATA31D3P0C874 917 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 ODC1P11926 461 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 TYMPP19971 482 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 ACAT1P24752 427 aaKnown RBP10.51□□□□□ -0.73
CLK3-208ENST00000562626 LMO2P25791 158 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 GTF2H1P32780 548 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 OR1D2P34982 312 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 ASPAP45381 313 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 ZNF165P49910 485 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 AP3M2P53677 418 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 NOP14P78316 857 aaKnown RBP10.51□□□□□ -0.73
CLK3-208ENST00000562626 MYL7Q01449 175 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 MYL5Q02045 173 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 ELAVL2Q12926 359 aaKnown RBP10.51□□□□□ -0.73
CLK3-208ENST00000562626 TRPC3Q13507 836 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 COL19A1Q14993 1142 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 KRT31Q15323 416 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 PTPN21Q16825 1174 aa10.51□□□□□ -0.73
CLK3-208ENST00000562626 PTPROQ16827 1216 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms