RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 SPATA1Q5VX52 437 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 ARL6IP4Q66PJ3 421 aaKnown RBP17.88■□□□□ 0.45
CLN3-208ENST00000561505 LAIR1Q6GTX8 287 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 GAREM2Q75VX8 874 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 TMEM130Q8N3G9 435 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 LRRC3BQ96PB8 259 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 RTKNQ9BST9 563 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 C8orf33Q9H7E9 229 aaPredicted RBP17.88■□□□□ 0.45
CLN3-208ENST00000561505 LARSQ9P2J5 1176 aaKnown RBP17.88■□□□□ 0.45
CLN3-208ENST00000561505 ANKFY1Q9P2R3 1169 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 ODF2LQ9ULJ1 636 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 TICRRQ7Z2Z1 1910 aa17.88■□□□□ 0.45
CLN3-208ENST00000561505 LACTBL1A8MY62 500 aa17.87■□□□□ 0.45
CLN3-208ENST00000561505 K7ESF4 209 aa17.87■□□□□ 0.45
CLN3-208ENST00000561505 CYP11A1P05108 521 aa17.87■□□□□ 0.45
CLN3-208ENST00000561505 PLA2G4BP0C869 781 aa17.87■□□□□ 0.45
CLN3-208ENST00000561505 CCNE1P24864 410 aa17.87■□□□□ 0.45
CLN3-208ENST00000561505 CNR2P34972 360 aa17.87■□□□□ 0.45
CLN3-208ENST00000561505 CXCL12P48061 93 aa17.87■□□□□ 0.45
CLN3-208ENST00000561505 DUSP4Q13115 394 aa17.87■□□□□ 0.45
CLN3-208ENST00000561505 ENOX2Q16206 610 aaKnown RBP17.87■□□□□ 0.45
CLN3-208ENST00000561505 HAUS6Q7Z4H7 955 aa17.87■□□□□ 0.45
CLN3-208ENST00000561505 PSMG2Q969U7 264 aa17.87■□□□□ 0.45
CLN3-208ENST00000561505 TIMM13Q9Y5L4 95 aaPredicted RBP17.87■□□□□ 0.45
CLN3-208ENST00000561505 A0A0B4J269 797 aa17.86■□□□□ 0.45
CLN3-208ENST00000561505 ANO9A1A5B4 782 aa17.86■□□□□ 0.45
CLN3-208ENST00000561505 MTMR11A4FU01 709 aa17.86■□□□□ 0.45
CLN3-208ENST00000561505 OGTO15294 1046 aa17.86■□□□□ 0.45
CLN3-208ENST00000561505 RETP07949 1114 aa17.86■□□□□ 0.45
CLN3-208ENST00000561505 OR4Q2P0C623 313 aa17.86■□□□□ 0.45
CLN3-208ENST00000561505 HARSP12081 509 aaKnown RBP17.86■□□□□ 0.45
CLN3-208ENST00000561505 TNFSF9P41273 254 aa17.86■□□□□ 0.45
CLN3-208ENST00000561505 EPHB3P54753 998 aa17.86■□□□□ 0.45
CLN3-208ENST00000561505 LILRA4P59901 499 aa17.86■□□□□ 0.45
CLN3-208ENST00000561505 SATB1Q01826 763 aa17.86■□□□□ 0.45
CLN3-208ENST00000561505 RALGPS2Q86X27 583 aaPredicted RBP17.86■□□□□ 0.45
CLN3-208ENST00000561505 ARID3BQ8IVW6 561 aaPredicted RBP17.86■□□□□ 0.45
CLN3-208ENST00000561505 CD302Q8IX05 232 aa17.86■□□□□ 0.45
CLN3-208ENST00000561505 KIF12Q96FN5 646 aa17.86■□□□□ 0.45
CLN3-208ENST00000561505 FIZ1Q96SL8 496 aa17.86■□□□□ 0.45
CLN3-208ENST00000561505 CPSF3Q9UKF6 684 aaKnown RBP17.86■□□□□ 0.45
CLN3-208ENST00000561505 A0A1W2PRU2 124 aa17.85■□□□□ 0.45
CLN3-208ENST00000561505 PIRO00625 290 aa17.85■□□□□ 0.45
CLN3-208ENST00000561505 PPEF2O14830 753 aa17.85■□□□□ 0.45
CLN3-208ENST00000561505 XPOTO43592 962 aaKnown RBP17.85■□□□□ 0.45
CLN3-208ENST00000561505 HRO43593 1189 aa17.85■□□□□ 0.45
CLN3-208ENST00000561505 FGF19O95750 216 aa17.85■□□□□ 0.45
CLN3-208ENST00000561505 TPRP12270 2363 aaKnown RBP17.85■□□□□ 0.45
CLN3-208ENST00000561505 POU5F1Q01860 360 aaKnown RBP17.85■□□□□ 0.45
CLN3-208ENST00000561505 PPP2R3AQ06190 1150 aa17.85■□□□□ 0.45
CLN3-208ENST00000561505 SPAG1Q07617 926 aa17.85■□□□□ 0.45
CLN3-208ENST00000561505 RAD51AP2Q09MP3 1159 aa17.85■□□□□ 0.45
CLN3-208ENST00000561505 DGKKQ5KSL6 1271 aa17.85■□□□□ 0.45
CLN3-208ENST00000561505 DNAJB7Q7Z6W7 309 aaPredicted RBP17.85■□□□□ 0.45
CLN3-208ENST00000561505 LRRC15Q8TF66 581 aa17.85■□□□□ 0.45
CLN3-208ENST00000561505 GMEB2Q9UKD1 530 aa17.85■□□□□ 0.45
CLN3-208ENST00000561505 TBX20Q9UMR3 447 aa17.85■□□□□ 0.45
CLN3-208ENST00000561505 DERAQ9Y315 318 aa17.85■□□□□ 0.45
CLN3-208ENST00000561505 ALDH1A3P47895 512 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 CCINQ13939 588 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 LRRC32Q14392 662 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 ARHGAP29Q52LW3 1261 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 STXBP5Q5T5C0 1151 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 OVOS1Q6IE37 1185 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 SLC39A4Q6P5W5 647 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 TXNDC11Q6PKC3 985 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 USP37Q86T82 979 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 SYNPOQ8N3V7 929 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 ATAD1Q8NBU5 361 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 SENP8Q96LD8 212 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 AK8Q96MA6 479 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 CCSER1Q9C0I3 900 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 IL21Q9HBE4 155 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 STYXL1Q9Y6J8 313 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 ACACBO00763 2458 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 SPTBN2O15020 2390 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 MYH11P35749 1972 aa17.84■□□□□ 0.45
CLN3-208ENST00000561505 NPHP3-ACAD11A0A0J9YXS1 232 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 SPECC1L-ADORA2AF8WAN1 911 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 SLC30A4O14863 429 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 CTHP32929 405 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 GUCY2FP51841 1108 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 GTF2BQ00403 316 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 CACNB1Q02641 598 aaPredicted RBP17.83■□□□□ 0.44
CLN3-208ENST00000561505 LONP2Q86WA8 852 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 TTC9BQ8N6N2 239 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 CSGALNACT1Q8TDX6 532 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 PGLYRP2Q96PD5 576 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 REEP2Q9BRK0 252 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 ST6GALNAC4Q9H4F1 302 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 ASB7Q9H672 318 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 BLOC1S4Q9NUP1 217 aa17.83■□□□□ 0.44
CLN3-208ENST00000561505 CDV3Q9UKY7 258 aaKnown RBP17.83■□□□□ 0.44
CLN3-208ENST00000561505 NUP210Q8TEM1 1887 aaPredicted RBP17.82■□□□□ 0.44
CLN3-208ENST00000561505 LIG4P49917 911 aa17.82■□□□□ 0.44
CLN3-208ENST00000561505 CSRP2Q16527 193 aa17.82■□□□□ 0.44
CLN3-208ENST00000561505 C9orf57Q5W0N0 161 aa17.82■□□□□ 0.44
CLN3-208ENST00000561505 DSTYKQ6XUX3 929 aa17.82■□□□□ 0.44
CLN3-208ENST00000561505 ITIH5Q86UX2 942 aa17.82■□□□□ 0.44
CLN3-208ENST00000561505 OR10T2Q8NGX3 314 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms