RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 STRA6Q9BX79 667 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 FGFBP2Q9BYJ0 223 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 ASB7Q9H672 318 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 ZFP14Q9HCL3 533 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 PANK4Q9NVE7 773 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 SEL1LQ9UBV2 794 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 MAFFQ9ULX9 164 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 DERAQ9Y315 318 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 YIPF1Q9Y548 306 aa11.07□□□□□ -0.64
LDLR-214ENST00000560628 KANSL1LA0AUZ9 987 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 GOLGA8IPA6NC78 632 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 GOLGA8JA6NMD2 632 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 FAM170BA6NMN3 283 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 CYB561D2O14569 222 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 PRPF6O94906 941 aaKnown RBP11.06□□□□□ -0.64
LDLR-214ENST00000560628 ODC1P11926 461 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 FCARP24071 287 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 ALDH1A3P47895 512 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 NASPP49321 788 aaPredicted RBP11.06□□□□□ -0.64
LDLR-214ENST00000560628 EPHB3P54753 998 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 WNT7BP56706 349 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 PFKPQ01813 784 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 MYBPC2Q14324 1141 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 TEAD2Q15562 447 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 FOXD4L6Q3SYB3 417 aaPredicted RBP11.06□□□□□ -0.64
LDLR-214ENST00000560628 L1TD1Q5T7N2 865 aaKnown RBP11.06□□□□□ -0.64
LDLR-214ENST00000560628 CENPPQ6IPU0 288 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 FOXD4L3Q6VB84 417 aaPredicted RBP11.06□□□□□ -0.64
LDLR-214ENST00000560628 EFCAB13Q8IY85 973 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 LINC00301Q8NCQ3 95 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 PJA1Q8NG27 643 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 OR10T2Q8NGX3 314 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 HPS3Q969F9 1004 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 ELSPBP1Q96BH3 223 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 HVCN1Q96D96 273 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 PYM1Q9BRP8 204 aaKnown RBP11.06□□□□□ -0.64
LDLR-214ENST00000560628 OXCT2Q9BYC2 517 aaPredicted RBP11.06□□□□□ -0.64
LDLR-214ENST00000560628 DNAJC25Q9H1X3 360 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 PCIF1Q9H4Z3 704 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 ASAH2Q9NR71 780 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 DLGAP2Q9P1A6 1054 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 EXOC7Q9UPT5 735 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 C2CD2Q9Y426 696 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 PCDHB13Q9Y5F0 798 aa11.06□□□□□ -0.64
LDLR-214ENST00000560628 MTMR11A4FU01 709 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 PRR23AA6NEV1 266 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 SPTLC2O15270 562 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 MICAL2O94851 1124 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 TAF6P49848 677 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 TFAMQ00059 246 aaKnown RBP11.05□□□□□ -0.64
LDLR-214ENST00000560628 PRKCQQ04759 706 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 SLC39A12Q504Y0 691 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 WSCD1Q658N2 575 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 SCARA3Q6AZY7 606 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 TPRG1Q6ZUI0 275 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 DNAJB7Q7Z6W7 309 aaPredicted RBP11.05□□□□□ -0.64
LDLR-214ENST00000560628 METTL23Q86XA0 190 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 C1orf210Q8IVY1 113 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 SHKBP1Q8TBC3 707 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 ZSCAN18Q8TBC5 510 aaPredicted RBP11.05□□□□□ -0.64
LDLR-214ENST00000560628 SMARCD2Q92925 531 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 NKD2Q969F2 451 aaPredicted RBP11.05□□□□□ -0.64
LDLR-214ENST00000560628 BORCS6Q96GS4 357 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 FAM84AQ96KN4 292 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 ZNF396Q96N95 335 aaPredicted RBP11.05□□□□□ -0.64
LDLR-214ENST00000560628 ASB16Q96NS5 453 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 CBWD1Q9BRT8 395 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 TRMT61BQ9BVS5 477 aaKnown RBP11.05□□□□□ -0.64
LDLR-214ENST00000560628 LRRC3Q9BY71 257 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 SLITRK6Q9H5Y7 841 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 BRD9Q9H8M2 597 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 HEBP1Q9NRV9 189 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 MORC2Q9Y6X9 1032 aaPredicted RBP11.05□□□□□ -0.64
LDLR-214ENST00000560628 R4GN57 208 aa11.05□□□□□ -0.64
LDLR-214ENST00000560628 COL4A3Q01955 1670 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 PTPRZ1P23471 2315 aaPredicted RBP11.04□□□□□ -0.64
LDLR-214ENST00000560628 PDCD11Q14690 1871 aaKnown RBP11.04□□□□□ -0.64
LDLR-214ENST00000560628 A0A1W2PRU2 124 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 KPNA7A9QM74 516 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 IL18RAPO95256 599 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 CYP11A1P05108 521 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 PAX3P23760 479 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 GDI1P31150 447 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 EPHA5P54756 1037 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 POU5F1Q01860 360 aaKnown RBP11.04□□□□□ -0.64
LDLR-214ENST00000560628 PLD1Q13393 1074 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 MGAT5BQ3V5L5 792 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 STXBP5Q5T5C0 1151 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 VITQ6UXI7 678 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 LRRTM3Q86VH5 581 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 TMC8Q8IU68 726 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 CCDC65Q8IXS2 484 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 THEM5Q8N1Q8 247 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 LEMD2Q8NC56 503 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 SPRYD3Q8NCJ5 442 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 GLIS3Q8NEA6 775 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 FAM200AQ8TCP9 573 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 KCNG4Q8TDN1 519 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 GIPC2Q8TF65 315 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 SNX21Q969T3 373 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms