RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 FKBP1AP62942 108 aaKnown RBP11.98□□□□□ -0.49
CUX1-218ENST00000560541 RNF220Q5VTB9 566 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 MAP4K3Q8IVH8 894 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 SLCO2A1Q92959 643 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 C1orf112Q9NSG2 853 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 NKIRAS1Q9NYS0 192 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 COQ4Q9Y3A0 265 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.98□□□□□ -0.49
CUX1-218ENST00000560541 MYPNQ86TC9 1320 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 CFAP73A6NFT4 308 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 FOXN2P32314 431 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 GJA8P48165 433 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 WNT7BP56706 349 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 RPS6P62753 249 aaKnown RBP11.98□□□□□ -0.49
CUX1-218ENST00000560541 P3H1Q32P28 736 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 TMEM63BQ5T3F8 832 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 ERICH1Q86X53 443 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 SYTL5Q8TDW5 730 aaPredicted RBP11.98□□□□□ -0.49
CUX1-218ENST00000560541 ACSF2Q96CM8 615 aaPredicted RBP11.98□□□□□ -0.49
CUX1-218ENST00000560541 HAUS1Q96CS2 278 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 IWS1Q96ST2 819 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 ARL2BPQ9Y2Y0 163 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 UBIAD1Q9Y5Z9 338 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 POC1B-GALNT4F8VUJ3 575 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 ETS1P14921 441 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 TCF4P15884 667 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 TNNI1P19237 187 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 DSG3P32926 999 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 PSMC5P62195 406 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 BNIP1Q12981 228 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 DLGAP5Q15398 846 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 GALNTL6Q49A17 601 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 LONP2Q86WA8 852 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 GRK7Q8WTQ7 553 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 MAIP1Q8WWC4 291 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 ZNF516Q92618 1163 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 CEP170P1Q96L14 293 aa11.98□□□□□ -0.49
CUX1-218ENST00000560541 RBM15Q96T37 977 aaKnown RBP eCLIP11.98□□□□□ -0.491e-11■■■■□ 20.4
CUX1-218ENST00000560541 FHDC1Q9C0D6 1143 aaPredicted RBP11.98□□□□□ -0.49
CUX1-218ENST00000560541 MAPK13O15264 365 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 PIAS1O75925 651 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 FDX1P10109 184 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 ATF7P17544 494 aaPredicted RBP11.97□□□□□ -0.49
CUX1-218ENST00000560541 PCK1P35558 622 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 ACOT2P49753 483 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 DNAJC3Q13217 504 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 MTM1Q13496 603 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 FASTKD3Q14CZ7 662 aaKnown RBP11.97□□□□□ -0.49
CUX1-218ENST00000560541 FAM151AQ8WW52 585 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 OSBPL8Q9BZF1 889 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 SPATA7Q9P0W8 599 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 CDH16O75309 829 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 PTGER2P43116 358 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 PCNX4Q63HM2 1172 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 ECHDC2Q86YB7 292 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 C4orf19Q8IY42 314 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 C4orf33Q8N1A6 199 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 ANKLE1Q8NAG6 615 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 RMDN3Q96TC7 470 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 ARPC5LQ9BPX5 153 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 PITPNM3Q9BZ71 974 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 ST6GALNAC4Q9H4F1 302 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 SAYSD1Q9NPB0 183 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 SLCO1B3Q9NPD5 702 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 KLHL14Q9P2G3 628 aa11.97□□□□□ -0.49
CUX1-218ENST00000560541 CNTNAP1P78357 1384 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 UMODL1Q5DID0 1318 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 EXOC1LA0A1B0GW35 172 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 WDR64B1ANS9 1081 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 PMM2O15305 246 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 PFDN1O60925 122 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 TAC1P20366 129 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 WDR4P57081 412 aaKnown RBP11.96□□□□□ -0.49
CUX1-218ENST00000560541 KLF1Q13351 362 aaPredicted RBP11.96□□□□□ -0.49
CUX1-218ENST00000560541 ZNF268Q14587 947 aaPredicted RBP11.96□□□□□ -0.49
CUX1-218ENST00000560541 PGM5Q15124 567 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 KBTBD12Q3ZCT8 623 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 TMEM270Q6UE05 265 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 ARHGEF18Q6ZSZ5 1173 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 GPD1LQ8N335 351 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 C7orf43Q8WVR3 580 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 C17orf50Q8WW18 174 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 MFSD14AQ96MC6 490 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 SYT15Q9BQS2 421 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 TBC1D22BQ9NU19 505 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 WDR35Q9P2L0 1181 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 GABBR1Q9UBS5 961 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 SYNPO2Q9UMS6 1093 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 PCNTO95613 3336 aa11.96□□□□□ -0.49
CUX1-218ENST00000560541 PROSCO94903 275 aa11.96□□□□□ -0.5
CUX1-218ENST00000560541 MAGEA4P43358 317 aa11.96□□□□□ -0.5
CUX1-218ENST00000560541 PSMC4P43686 418 aa11.96□□□□□ -0.5
CUX1-218ENST00000560541 ANKRD20A2Q5SQ80 823 aa11.96□□□□□ -0.5
CUX1-218ENST00000560541 ANKRD20A1Q5TYW2 823 aa11.96□□□□□ -0.5
CUX1-218ENST00000560541 ANKRD20A3Q5VUR7 823 aa11.96□□□□□ -0.5
CUX1-218ENST00000560541 SCARA3Q6AZY7 606 aa11.96□□□□□ -0.5
CUX1-218ENST00000560541 OLFML1Q6UWY5 402 aa11.96□□□□□ -0.5
CUX1-218ENST00000560541 TAB3Q8N5C8 712 aaPredicted RBP11.96□□□□□ -0.5
CUX1-218ENST00000560541 RXFP1Q9HBX9 757 aa11.96□□□□□ -0.5
CUX1-218ENST00000560541 ADAM22Q9P0K1 906 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms