RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ZCWPW2Q504Y3 356 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 ATF7IP2Q5U623 682 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 INTS8Q75QN2 995 aaKnown RBP12.74□□□□□ -0.37
LDLR-212ENST00000560467 GET4Q7L5D6 327 aaPredicted RBP12.74□□□□□ -0.37
LDLR-212ENST00000560467 ERMP1Q7Z2K6 904 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 PALB2Q86YC2 1186 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 IFNLR1Q8IU57 520 aaPredicted RBP12.74□□□□□ -0.37
LDLR-212ENST00000560467 GLYCTKQ8IVS8 523 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 FAM186BQ8IYM0 893 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 SLC44A3Q8N4M1 653 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 TMEM174Q8WUU8 243 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 CNOT6LQ96LI5 555 aaKnown RBP12.74□□□□□ -0.37
LDLR-212ENST00000560467 PCMTD1Q96MG8 357 aaPredicted RBP12.74□□□□□ -0.37
LDLR-212ENST00000560467 TUBGCP2Q9BSJ2 902 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 MSTO1Q9BUK6 570 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 FGFBP2Q9BYJ0 223 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 FZD8Q9H461 694 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 RXFP1Q9HBX9 757 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 HSPBP1Q9NZL4 362 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 IFNKQ9P0W0 207 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 ANKFY1Q9P2R3 1169 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 WNT16Q9UBV4 365 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 LIMA1Q9UHB6 759 aaKnown RBP12.74□□□□□ -0.37
LDLR-212ENST00000560467 ZNF292O60281 2723 aa12.74□□□□□ -0.37
LDLR-212ENST00000560467 LRRC10BA6NIK2 292 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 ZNF233A6NK53 670 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 MAPK13O15264 365 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 PIGRP01833 764 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 DCNP07585 359 aaKnown RBP12.73□□□□□ -0.37
LDLR-212ENST00000560467 SRFP11831 508 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 CCDC173Q0VFZ6 552 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 MAN2A1Q16706 1144 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 FAM187BQ17R55 369 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 TCERG1LQ5VWI1 586 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 ELMSAN1Q6PJG2 1045 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.73□□□□□ -0.37
LDLR-212ENST00000560467 GPR152Q8TDT2 470 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 RABGGTAQ92696 567 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 EEF2KMTQ96G04 330 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 MRFAP1L1Q96HT8 127 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 RHOBTB2Q9BYZ6 727 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 GPR62Q9BZJ7 368 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 TRIM6Q9C030 488 aaPredicted RBP12.73□□□□□ -0.37
LDLR-212ENST00000560467 NXF3Q9H4D5 531 aaKnown RBP12.73□□□□□ -0.37
LDLR-212ENST00000560467 PCIF1Q9H4Z3 704 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 CACNG4Q9UBN1 327 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 AGO2Q9UKV8 859 aaKnown RBP12.73□□□□□ -0.37
LDLR-212ENST00000560467 SSX2IPQ9Y2D8 614 aa12.73□□□□□ -0.37
LDLR-212ENST00000560467 CEP250Q9BV73 2442 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 OTOGLQ3ZCN5 2332 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 B4GALT5O43286 388 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 TGM5O43548 720 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 NRDCO43847 1150 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 EXTL3O43909 919 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 LMNAP02545 664 aaKnown RBP12.72□□□□□ -0.37
LDLR-212ENST00000560467 ATP1A3P13637 1013 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 HOXD13P35453 343 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 ZNF75DP51815 510 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 COPB1P53618 953 aaKnown RBP12.72□□□□□ -0.37
LDLR-212ENST00000560467 UBXN1Q04323 297 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 MBTD1Q05BQ5 628 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 HTR4Q13639 388 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 KRT31Q15323 416 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 SURF1Q15526 300 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 VWA3BQ502W6 1294 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 FUT10Q6P4F1 479 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 NOTUMQ6P988 496 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 MPZL3Q6UWV2 235 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 CYP26C1Q6V0L0 522 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 CDR2LQ86X02 465 aaPredicted RBP12.72□□□□□ -0.37
LDLR-212ENST00000560467 HACE1Q8IYU2 909 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 GPD1LQ8N335 351 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 RDH13Q8NBN7 331 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 RMDN1Q96DB5 314 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 CCDC51Q96ER9 411 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 FNBP1Q96RU3 617 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 ACO2Q99798 780 aaKnown RBP12.72□□□□□ -0.37
LDLR-212ENST00000560467 TARS2Q9BW92 718 aaKnown RBP12.72□□□□□ -0.37
LDLR-212ENST00000560467 FOXQ1Q9C009 403 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 VPS16Q9H269 839 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 PIDD1Q9HB75 910 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 UBN1Q9NPG3 1134 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 ARHGEF3Q9NR81 526 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 CHST7Q9NS84 486 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 DMAC2Q9NW81 257 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 DPP7Q9UHL4 492 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 TNFSF13BQ9Y275 285 aa12.72□□□□□ -0.37
LDLR-212ENST00000560467 WDR81Q562E7 1941 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 ANHXE9PGG2 379 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 MCF2P10911 925 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 HARSP12081 509 aaKnown RBP12.71□□□□□ -0.37
LDLR-212ENST00000560467 LAMP2P13473 410 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 AKAP5P24588 427 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 NOLC1Q14978 699 aaKnown RBP eCLIP12.71□□□□□ -0.379e-6■□□□□ 9.6
LDLR-212ENST00000560467 SNRNP35Q16560 246 aaKnown RBP12.71□□□□□ -0.37
LDLR-212ENST00000560467 AMHR2Q16671 573 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 DCAF4L1Q3SXM0 396 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 ZNF568Q3ZCX4 644 aa12.71□□□□□ -0.37
LDLR-212ENST00000560467 DCAF17Q5H9S7 520 aaPredicted RBP12.71□□□□□ -0.37
LDLR-212ENST00000560467 PRSS55Q6UWB4 352 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms