RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 GLYCTKQ8IVS8 523 aa12□□□□□ -0.49
USP3-218ENST00000560202 RPUSD2Q8IZ73 545 aaKnown RBP12□□□□□ -0.49
USP3-218ENST00000560202 SLC30A5Q8TAD4 765 aa12□□□□□ -0.49
USP3-218ENST00000560202 OLIG1Q8TAK6 271 aa12□□□□□ -0.49
USP3-218ENST00000560202 LNX1Q8TBB1 728 aaPredicted RBP12□□□□□ -0.49
USP3-218ENST00000560202 MMS19Q96T76 1030 aa12□□□□□ -0.49
USP3-218ENST00000560202 PCDHA13Q9Y5I0 950 aa12□□□□□ -0.49
USP3-218ENST00000560202 SNX9Q9Y5X1 595 aa12□□□□□ -0.49
USP3-218ENST00000560202 A0A0U1RQJ8 604 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 TRIM43BA6NCK2 446 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 GOLGA6L9A6NEM1 432 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 KPNA7A9QM74 516 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 SPTLC1O15269 473 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 FGFR1P11362 822 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 CHRNB2P17787 502 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 ITGB8P26012 769 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 RPL9P32969 192 aaKnown RBP11.99□□□□□ -0.49
USP3-218ENST00000560202 MAGEA1P43355 309 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 CLCNKBP51801 687 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 VAV2P52735 878 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 CDR2Q01850 454 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 SV2CQ496J9 727 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 ZNF394Q53GI3 561 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 CLLU1OSQ5K130 101 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 KIAA1328Q86T90 577 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 ATRIPQ8WXE1 791 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 DDX1Q92499 740 aaKnown RBP11.99□□□□□ -0.49
USP3-218ENST00000560202 ANKRD7Q92527 254 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 TRIM43Q96BQ3 446 aaPredicted RBP11.99□□□□□ -0.49
USP3-218ENST00000560202 FAM124BQ9H5Z6 455 aaPredicted RBP11.99□□□□□ -0.49
USP3-218ENST00000560202 SEPT11Q9NVA2 429 aaKnown RBP11.99□□□□□ -0.49
USP3-218ENST00000560202 GDAP2Q9NXN4 497 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 NAGPAQ9UK23 515 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 NENFQ9UMX5 172 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 PCDHB7Q9Y5E2 793 aa11.99□□□□□ -0.49
USP3-218ENST00000560202 TANC1Q9C0D5 1861 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.98□□□□□ -0.49
USP3-218ENST00000560202 CASTOR2A6NHX0 329 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 PODXLO00592 558 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 CTIFO43310 598 aaKnown RBP11.98□□□□□ -0.49
USP3-218ENST00000560202 CILPO75339 1184 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 CALCAP01258 141 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 MMEP08473 750 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 RAG1P15918 1043 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 GNA15P30679 374 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 LILRA4P59901 499 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 TUSC3Q13454 348 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 NOMO2Q5JPE7 1267 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 CCDC122Q5T0U0 273 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 C10orf76Q5T2E6 689 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 ALKBH5Q6P6C2 394 aaKnown RBP11.98□□□□□ -0.49
USP3-218ENST00000560202 CNKSR3Q6P9H4 555 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 ZNF677Q86XU0 584 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 TTC39CQ8N584 583 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 URGCPQ8TCY9 931 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 VWCEQ96DN2 955 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 DDX27Q96GQ7 796 aaKnown RBP11.98□□□□□ -0.49
USP3-218ENST00000560202 LUC7LQ9NQ29 371 aaKnown RBP11.98□□□□□ -0.49
USP3-218ENST00000560202 LZTFL1Q9NQ48 299 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 CACNG4Q9UBN1 327 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 LRFN2Q9ULH4 789 aa11.98□□□□□ -0.49
USP3-218ENST00000560202 RCCD1A6NED2 376 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 ARHGAP25P42331 645 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 FMO1Q01740 532 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 INCA1Q0VD86 236 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 IKBKEQ14164 716 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 UPP1Q16831 310 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 ARHGAP29Q52LW3 1261 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 ZNF662Q6ZS27 426 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 PALB2Q86YC2 1186 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 CRIPAKQ8N1N5 446 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 WHAMMQ8TF30 809 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 UROC1Q96N76 676 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 PCDHB18PQ96TA0 734 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 MRPL45Q9BRJ2 306 aaKnown RBP11.97□□□□□ -0.49
USP3-218ENST00000560202 PAAF1Q9BRP4 392 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 OGFRQ9NZT2 677 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 KANSL3Q9P2N6 904 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 BARX2Q9UMQ3 279 aaPredicted RBP11.97□□□□□ -0.49
USP3-218ENST00000560202 TFR2Q9UP52 801 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 PDCD11Q14690 1871 aaKnown RBP11.97□□□□□ -0.49
USP3-218ENST00000560202 HOXA2O43364 376 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 THAP12O43422 761 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 ABL1P00519 1130 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 CSF2RAP15509 400 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 IGFBP6P24592 240 aaPredicted RBP11.97□□□□□ -0.49
USP3-218ENST00000560202 NDST1P52848 882 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 RAD23BP54727 409 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 KIF5AQ12840 1032 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 PTPN14Q15678 1187 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 SOWAHAQ2M3V2 549 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 MFSD5Q6N075 450 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 NYAP1Q6ZVC0 841 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 ABI1Q8IZP0 508 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 TXLNBQ8N3L3 684 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 TMEM199Q8N511 208 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 RABGGTAQ92696 567 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 C16orf45Q96MC5 204 aaPredicted RBP11.97□□□□□ -0.49
USP3-218ENST00000560202 TWNKQ96RR1 684 aa11.97□□□□□ -0.49
USP3-218ENST00000560202 ELOVL4Q9GZR5 314 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms