RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 INO80BQ9C086 356 aaPredicted RBP19■□□□□ 0.63
SNX1-208ENST00000559844 MINDY3Q9H8M7 445 aa19■□□□□ 0.63
SNX1-208ENST00000559844 TMEM59LQ9UK28 342 aa19■□□□□ 0.63
SNX1-208ENST00000559844 GTF3C4Q9UKN8 822 aa19■□□□□ 0.63
SNX1-208ENST00000559844 COG5Q9UP83 839 aa19■□□□□ 0.63
SNX1-208ENST00000559844 CYP1A2P05177 515 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 DARSP14868 501 aaKnown RBP18.99■□□□□ 0.63
SNX1-208ENST00000559844 EIF4BP23588 611 aaKnown RBP18.99■□□□□ 0.63
SNX1-208ENST00000559844 CCL23P55773 120 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 CASP8Q14790 479 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 CLEC16AQ2KHT3 1053 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 GLIPR1L2Q4G1C9 344 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 ATF7IP2Q5U623 682 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 WNT8AQ9H1J5 351 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 CPSF3Q9UKF6 684 aaKnown RBP18.99■□□□□ 0.63
SNX1-208ENST00000559844 TTC7AQ9ULT0 858 aaPredicted RBP18.99■□□□□ 0.63
SNX1-208ENST00000559844 TTLL13PA6NNM8 815 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 MIF4GDA9UHW6 222 aaKnown RBP18.99■□□□□ 0.63
SNX1-208ENST00000559844 CCDC188H7C350 402 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 ABLIM1O14639 778 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 KIAA0355O15063 1070 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 CLTAP09496 248 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 MBTD1Q05BQ5 628 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 NCOA4Q13772 614 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 IFNLR1Q8IU57 520 aaPredicted RBP18.99■□□□□ 0.63
SNX1-208ENST00000559844 OR5B17Q8NGF7 314 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 DPF3Q92784 378 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 UBXN6Q9BZV1 441 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 VIPAS39Q9H9C1 493 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 PTPRHQ9HD43 1115 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 ACP6Q9NPH0 428 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 PRMT7Q9NVM4 692 aaPredicted RBP18.99■□□□□ 0.63
SNX1-208ENST00000559844 UVRAGQ9P2Y5 699 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 PRKAG2Q9UGJ0 569 aa18.99■□□□□ 0.63
SNX1-208ENST00000559844 TET1Q8NFU7 2136 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 DDX3YO15523 660 aaKnown RBP18.98■□□□□ 0.63
SNX1-208ENST00000559844 IQCF3P0C7M6 154 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 GHRP10912 638 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 TNFSF9P41273 254 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 NOP14P78316 857 aaKnown RBP18.98■□□□□ 0.63
SNX1-208ENST00000559844 SMC1AQ14683 1233 aaKnown RBP18.98■□□□□ 0.63
SNX1-208ENST00000559844 MBTPS1Q14703 1052 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 TMEM132AQ24JP5 1023 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 FBXO47Q5MNV8 452 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 ZNF653Q96CK0 615 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 TRIM11Q96F44 468 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 SCLYQ96I15 445 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 FAM84AQ96KN4 292 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 RPS6KC1Q96S38 1066 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 OSBPL7Q9BZF2 842 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 CARD9Q9H257 536 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 APOBEC3GQ9HC16 384 aaKnown RBP18.98■□□□□ 0.63
SNX1-208ENST00000559844 PCDH10Q9P2E7 1040 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 DMGDHQ9UI17 866 aaKnown RBP18.98■□□□□ 0.63
SNX1-208ENST00000559844 TNFSF13BQ9Y275 285 aa18.98■□□□□ 0.63
SNX1-208ENST00000559844 RAG1P15918 1043 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 FGFR4P22455 802 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 FAM187BQ17R55 369 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 ZNF568Q3ZCX4 644 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 SEZ6Q53EL9 994 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 PPP1R2P3Q6NXS1 205 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 TRIM72Q6ZMU5 477 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 IFT20Q8IY31 132 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 NAP1L3Q99457 506 aaPredicted RBP18.97■□□□□ 0.63
SNX1-208ENST00000559844 CNTN6Q9UQ52 1028 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 NOC2LQ9Y3T9 749 aaKnown RBP18.97■□□□□ 0.63
SNX1-208ENST00000559844 ZMYND10O75800 440 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 TIMP1P01033 207 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 MYBL1P10243 752 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 ACO1P21399 889 aaKnown RBP18.97■□□□□ 0.63
SNX1-208ENST00000559844 ITGB8P26012 769 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 RNASE9P60153 205 aaKnown RBP18.97■□□□□ 0.63
SNX1-208ENST00000559844 GABPB1Q06547 395 aaPredicted RBP18.97■□□□□ 0.63
SNX1-208ENST00000559844 LPIN1Q14693 890 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 PTPROQ16827 1216 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 DUOXA2Q1HG44 320 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 SPOPLQ6IQ16 392 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 UBL4BQ8N7F7 174 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 HDAC7Q8WUI4 952 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 ELMO3Q96BJ8 720 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 KRT12Q99456 494 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 PCDHB4Q9Y5E5 795 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 ALG6Q9Y672 507 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 LTBP2Q14767 1821 aa18.97■□□□□ 0.63
SNX1-208ENST00000559844 RPS6KA5O75582 802 aa18.96■□□□□ 0.63
SNX1-208ENST00000559844 ERLIN2O94905 339 aa18.96■□□□□ 0.63
SNX1-208ENST00000559844 TNNT3P45378 269 aaPredicted RBP18.96■□□□□ 0.63
SNX1-208ENST00000559844 ZNF564Q8TBZ8 553 aaPredicted RBP18.96■□□□□ 0.63
SNX1-208ENST00000559844 AGO3Q9H9G7 860 aaKnown RBP18.96■□□□□ 0.63
SNX1-208ENST00000559844 NBNO60934 754 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 CLSTN1O94985 981 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 IL18RAPO95256 599 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 UNGP13051 313 aaPredicted RBP18.95■□□□□ 0.62
SNX1-208ENST00000559844 SLC7A5Q01650 507 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 POU5F1Q01860 360 aaKnown RBP18.95■□□□□ 0.62
SNX1-208ENST00000559844 CATSPER4Q7RTX7 472 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 FAM228AQ86W67 206 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 AENQ8WTP8 325 aaKnown RBP18.95■□□□□ 0.62
SNX1-208ENST00000559844 NUP85Q9BW27 656 aa18.95■□□□□ 0.62
SNX1-208ENST00000559844 AVENQ9NQS1 362 aaPredicted RBP18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms