RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PSMC1P62191 440 aaKnown RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 RPS16P62249 146 aaKnown RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 NOMO3P69849 1222 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 MRPS21P82921 87 aaKnown RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 HTRA4P83105 476 aaPredicted RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 FMO1Q01740 532 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 APBA1Q02410 837 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 DUSP2Q05923 314 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 DUSP8Q13202 625 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 RIN1Q13671 783 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 TUBA3CQ13748 450 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 DAG1Q14118 895 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 USP10Q14694 798 aaKnown RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 CNGA2Q16280 664 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 SLC35G1Q2M3R5 365 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 CCDC93Q567U6 631 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 GJC2Q5T442 439 aaPredicted RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 ZKSCAN2Q63HK3 967 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 GGT6Q6P531 493 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 TUBA3EQ6PEY2 450 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 TMED8Q6PL24 325 aaPredicted RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 FAM180AQ6UWF9 173 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 MAMDC4Q6UXC1 1216 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 USP30Q70CQ3 517 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 APBB1IPQ7Z5R6 666 aaPredicted RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 RALYLQ86SE5 291 aaKnown RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 XYLT1Q86Y38 959 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 PLXDC1Q8IUK5 500 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 REXO1L1PQ8IX06 675 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 ANKRD42Q8N9B4 389 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 RNF169Q8NCN4 708 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 GIMAP8Q8ND71 665 aaPredicted RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 ACRBPQ8NEB7 543 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 MYRIPQ8NFW9 859 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 OR10H5Q8NGA6 315 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 OR5M3Q8NGP4 307 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 DEPTORQ8TB45 409 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 BRIX1Q8TDN6 353 aaKnown RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 ZNF483Q8TF39 744 aaPredicted RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 CASKIN2Q8WXE0 1202 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 SLC7A6OSQ96CW6 309 aaPredicted RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 MTFMTQ96DP5 389 aaKnown RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 FAM167AQ96KS9 214 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 LMF1Q96S06 567 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 CDC5LQ99459 802 aaKnown RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 TTPALQ9BTX7 342 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 MRI1Q9BV20 369 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 CARD11Q9BXL7 1154 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 TRIM54Q9BYV2 358 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 LDHAL6BQ9BYZ2 381 aaPredicted RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 OR10A2Q9H208 303 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 SLC6A15Q9H2J7 730 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 WDCPQ9H6R7 721 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 AGO3Q9H9G7 860 aaKnown RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 SEC61A2Q9H9S3 476 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 SMURF2Q9HAU4 748 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 ZNF287Q9HBT7 754 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 SARS2Q9NP81 518 aaKnown RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 IL23AQ9NPF7 189 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 SLC2A4RGQ9NR83 387 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 TMEM140Q9NV12 185 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 FBXO34Q9NWN3 711 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 LUZP4Q9P127 313 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 CALCOCO1Q9P1Z2 691 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 HECAQ9UBI9 543 aaPredicted RBP2.01□□□□□ -2.09
USP3-209ENST00000558925 OGDHLQ9ULD0 1010 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 SLC4A7Q9Y6M7 1214 aa2.01□□□□□ -2.09
USP3-209ENST00000558925 A0A1W2PPC4 97 aa2□□□□□ -2.09
USP3-209ENST00000558925 UBE2QL1A1L167 161 aa2□□□□□ -2.09
USP3-209ENST00000558925 ZNF785A8K8V0 405 aa2□□□□□ -2.09
USP3-209ENST00000558925 INO80B-WBP1J3KQ70 363 aa2□□□□□ -2.09
USP3-209ENST00000558925 APOL1O14791 398 aa2□□□□□ -2.09
USP3-209ENST00000558925 FOXN1O15353 648 aa2□□□□□ -2.09
USP3-209ENST00000558925 ARHGAP6O43182 974 aa2□□□□□ -2.09
USP3-209ENST00000558925 MTSS1O43312 755 aa2□□□□□ -2.09
USP3-209ENST00000558925 RAMP2O60895 175 aa2□□□□□ -2.09
USP3-209ENST00000558925 DNAJB5O75953 348 aa2□□□□□ -2.09
USP3-209ENST00000558925 UNC5CO95185 931 aa2□□□□□ -2.09
USP3-209ENST00000558925 IL18RAPO95256 599 aa2□□□□□ -2.09
USP3-209ENST00000558925 ARIH2O95376 493 aa2□□□□□ -2.09
USP3-209ENST00000558925 ABHD16AO95870 558 aa2□□□□□ -2.09
USP3-209ENST00000558925 JUNP05412 331 aaKnown RBP2□□□□□ -2.09
USP3-209ENST00000558925 GJB1P08034 283 aa2□□□□□ -2.09
USP3-209ENST00000558925 IL1R1P14778 569 aa2□□□□□ -2.09
USP3-209ENST00000558925 ZNF37AP17032 561 aaPredicted RBP2□□□□□ -2.09
USP3-209ENST00000558925 ATP5JP18859 108 aa2□□□□□ -2.09
USP3-209ENST00000558925 PDIA3P30101 505 aaKnown RBP2□□□□□ -2.09
USP3-209ENST00000558925 KCNJ5P48544 419 aa2□□□□□ -2.09
USP3-209ENST00000558925 PIK3CGP48736 1102 aa2□□□□□ -2.09
USP3-209ENST00000558925 GZMKP49863 264 aa2□□□□□ -2.09
USP3-209ENST00000558925 ARFIP2P53365 341 aa2□□□□□ -2.09
USP3-209ENST00000558925 SESN2P58004 480 aaPredicted RBP2□□□□□ -2.09
USP3-209ENST00000558925 TNFAIP2Q03169 654 aa2□□□□□ -2.09
USP3-209ENST00000558925 SP140Q13342 867 aa2□□□□□ -2.09
USP3-209ENST00000558925 ELF2Q15723 593 aa2□□□□□ -2.09
USP3-209ENST00000558925 MPEG1Q2M385 716 aa2□□□□□ -2.09
USP3-209ENST00000558925 PABPC1LQ4VXU2 614 aaKnown RBP2□□□□□ -2.09
USP3-209ENST00000558925 DGKKQ5KSL6 1271 aa2□□□□□ -2.09
USP3-209ENST00000558925 IZUMO3Q5VZ72 239 aa2□□□□□ -2.09
USP3-209ENST00000558925 RRAGBQ5VZM2 374 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms