RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 CST9Q5W186 159 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 ZNF449Q6P9G9 518 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 EPM2AIP1Q7L775 607 aaPredicted RBP11.51□□□□□ -0.57
USP3-206ENST00000558157 FRMD5Q7Z6J6 570 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 C12orf50Q8NA57 414 aaPredicted RBP11.51□□□□□ -0.57
USP3-206ENST00000558157 UHMK1Q8TAS1 419 aaKnown RBP11.51□□□□□ -0.57
USP3-206ENST00000558157 SLC35G2Q8TBE7 412 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 MORC4Q8TE76 937 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 RAD54LQ92698 747 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 PPP2R3CQ969Q6 453 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 TYW1Q9NV66 732 aaKnown RBP11.51□□□□□ -0.57
USP3-206ENST00000558157 AGTPBP1Q9UPW5 1226 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 TMEM221A6NGB7 291 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 PRPF4O43172 522 aaKnown RBP eCLIP11.51□□□□□ -0.57
USP3-206ENST00000558157 CYP1A1P04798 512 aaPredicted RBP11.51□□□□□ -0.57
USP3-206ENST00000558157 BPIFB4P59827 614 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 SNAPC2Q13487 334 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 SPARCL1Q14515 664 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 STAT4Q14765 748 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 TCEAL1Q15170 157 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 PDK4Q16654 411 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 PTPROQ16827 1216 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 EXOC3L4Q17RC7 722 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 SNRNP48Q6IEG0 339 aaKnown RBP11.51□□□□□ -0.57
USP3-206ENST00000558157 C11orf63Q6NUN7 778 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 SLC30A5Q8TAD4 765 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 DDX12PQ92771 950 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 CADM1Q9BY67 442 aaKnown RBP11.51□□□□□ -0.57
USP3-206ENST00000558157 PCDH18Q9HCL0 1135 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 KRT82Q9NSB4 513 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 SENP1Q9P0U3 644 aa11.51□□□□□ -0.57
USP3-206ENST00000558157 ZNF214Q9UL59 606 aaPredicted RBP11.51□□□□□ -0.57
USP3-206ENST00000558157 PAIP2BQ9ULR5 123 aaKnown RBP11.51□□□□□ -0.57
USP3-206ENST00000558157 HGSO14964 777 aaPredicted RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 GSC2O15499 205 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 SLC37A4O43826 429 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 KRT36O76013 467 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 FOSP01100 380 aaPredicted RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 VAV1P15498 845 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 ITIH2P19823 946 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 CRABP2P29373 138 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 RPL26P61254 145 aaKnown RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 TMEM266Q2M3C6 531 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 CTC1Q2NKJ3 1217 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 TAF1BQ53T94 588 aaPredicted RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 FAM26FQ5R3K3 315 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 FYB2Q5VWT5 728 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 GPAT2Q6NUI2 795 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 SYDE1Q6ZW31 735 aaPredicted RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 ACAD11Q709F0 780 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 PHLDB2Q86SQ0 1253 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 SPATA24Q86W54 205 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 RHOT2Q8IXI1 618 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 ZBTB8BQ8NAP8 495 aaPredicted RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 SMYD1Q8NB12 490 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 MIPEPQ99797 713 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 MLXIPLQ9NP71 852 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 TIMMDC1Q9NPL8 285 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 HOXC10Q9NYD6 342 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 SMG5Q9UPR3 1016 aaKnown RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 SSX2IPQ9Y2D8 614 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 RIPK3Q9Y572 518 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 FRMPD4Q14CM0 1322 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 GTPBP10A4D1E9 387 aaKnown RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 STRNO43815 780 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 PEX10O60683 326 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 CBX6O95503 412 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 SREBF1P36956 1147 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 COILP38432 576 aaPredicted RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 TECP42680 631 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 HSD17B4P51659 736 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 CLCN2P51788 898 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 OAZ1P54368 228 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 ARHGAP4P98171 946 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 HNRNPDQ14103 355 aaKnown RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 UBAP2Q5T6F2 1119 aaKnown RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 DSTYKQ6XUX3 929 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 FAM47EQ6ZV65 393 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 FASTKD5Q7L8L6 764 aaKnown RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 DYMQ7RTS9 669 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 CLNKQ7Z7G1 428 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 U2AF1L4Q8WU68 220 aaKnown RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 RSPH1Q8WYR4 309 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 GPBP1L1Q9HC44 474 aaPredicted RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 CYLDQ9NQC7 956 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 BMP2KQ9NSY1 1161 aaPredicted RBP11.5□□□□□ -0.57
USP3-206ENST00000558157 RNF146Q9NTX7 359 aa11.5□□□□□ -0.57
USP3-206ENST00000558157 ACSL3O95573 720 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 GAS8O95995 478 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 UBTFL6P0CB48 400 aaPredicted RBP11.49□□□□□ -0.57
USP3-206ENST00000558157 CPA3P15088 417 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 PON1P27169 355 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 HPCAP84074 193 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 COASYQ13057 564 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 ZC2HC1CQ53FD0 456 aaPredicted RBP11.49□□□□□ -0.57
USP3-206ENST00000558157 SEL1L2Q5TEA6 688 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 RHBDF2Q6PJF5 856 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 RELL1Q8IUW5 271 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 CRYGNQ8WXF5 182 aa11.49□□□□□ -0.57
USP3-206ENST00000558157 MCUR1Q96AQ8 359 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms