RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 TSC22D4Q9Y3Q8 395 aa7.44□□□□□ -1.22
RTF1-204ENST00000558117 CDY2AQ9Y6F7 541 aa7.44□□□□□ -1.22
RTF1-204ENST00000558117 JUNP05412 331 aaKnown RBP7.43□□□□□ -1.22
RTF1-204ENST00000558117 CDK17Q00537 523 aa7.43□□□□□ -1.22
RTF1-204ENST00000558117 MGAT5Q09328 741 aa7.43□□□□□ -1.22
RTF1-204ENST00000558117 ARHGEF6Q15052 776 aa7.43□□□□□ -1.22
RTF1-204ENST00000558117 PRKD1Q15139 912 aaPredicted RBP7.43□□□□□ -1.22
RTF1-204ENST00000558117 TOR2AQ5JU69 321 aa7.43□□□□□ -1.22
RTF1-204ENST00000558117 TMEM31Q5JXX7 168 aa7.43□□□□□ -1.22
RTF1-204ENST00000558117 LMBR1LQ6UX01 489 aa7.43□□□□□ -1.22
RTF1-204ENST00000558117 GLB1L2Q8IW92 636 aa7.43□□□□□ -1.22
RTF1-204ENST00000558117 CBARPQ8N350 705 aaPredicted RBP7.43□□□□□ -1.22
RTF1-204ENST00000558117 D2HGDHQ8N465 521 aa7.43□□□□□ -1.22
RTF1-204ENST00000558117 U2AF1L4Q8WU68 220 aaKnown RBP7.43□□□□□ -1.22
RTF1-204ENST00000558117 ATXN2LQ8WWM7 1075 aaKnown RBP7.43□□□□□ -1.22
RTF1-204ENST00000558117 ASB2Q96Q27 587 aa7.43□□□□□ -1.22
RTF1-204ENST00000558117 GPHA2Q96T91 129 aa7.43□□□□□ -1.22
RTF1-204ENST00000558117 KRTAP4-7Q9BYR0 210 aa7.43□□□□□ -1.22
RTF1-204ENST00000558117 BRINP2Q9C0B6 783 aa7.43□□□□□ -1.22
RTF1-204ENST00000558117 DPP7Q9UHL4 492 aa7.43□□□□□ -1.22
RTF1-204ENST00000558117 USP34Q70CQ2 3546 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 PSMD14O00487 310 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 CCL5P13501 91 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 INSRRP14616 1297 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 ACO1P21399 889 aaKnown RBP7.42□□□□□ -1.22
RTF1-204ENST00000558117 KIR2DL3P43628 341 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 MTHFSP49914 203 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 CCT2P78371 535 aaKnown RBP7.42□□□□□ -1.22
RTF1-204ENST00000558117 SRSF2Q01130 221 aaKnown RBP7.42□□□□□ -1.22
RTF1-204ENST00000558117 ITKQ08881 620 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 FOXL1Q12952 345 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 KLF1Q13351 362 aaPredicted RBP7.42□□□□□ -1.22
RTF1-204ENST00000558117 KCNK18Q7Z418 384 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 ADGRE4PQ86SQ3 457 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 RPUSD2Q8IZ73 545 aaKnown RBP7.42□□□□□ -1.22
RTF1-204ENST00000558117 UNC5BQ8IZJ1 945 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 WWC2-AS2Q96NR7 200 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 TTYH1Q9H313 450 aaPredicted RBP7.42□□□□□ -1.22
RTF1-204ENST00000558117 IL23AQ9NPF7 189 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 ING3Q9NXR8 418 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 TRHDEQ9UKU6 1024 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 JAG2Q9Y219 1238 aa7.42□□□□□ -1.22
RTF1-204ENST00000558117 NOP58Q9Y2X3 529 aaKnown RBP7.42□□□□□ -1.22
RTF1-204ENST00000558117 KMT2BQ9UMN6 2715 aaPredicted RBP7.42□□□□□ -1.22
RTF1-204ENST00000558117 A0A1W2PR48 441 aa7.41□□□□□ -1.22
RTF1-204ENST00000558117 MRPS9P82933 396 aaKnown RBP7.41□□□□□ -1.22
RTF1-204ENST00000558117 NHLH1Q02575 133 aa7.41□□□□□ -1.22
RTF1-204ENST00000558117 SLC39A6Q13433 755 aa7.41□□□□□ -1.22
RTF1-204ENST00000558117 ZXDCQ2QGD7 858 aaPredicted RBP7.41□□□□□ -1.22
RTF1-204ENST00000558117 INAVAQ3KP66 663 aa7.41□□□□□ -1.22
RTF1-204ENST00000558117 SGMS1Q86VZ5 419 aa7.41□□□□□ -1.22
RTF1-204ENST00000558117 TSPEARQ8WU66 669 aa7.41□□□□□ -1.22
RTF1-204ENST00000558117 ARL8AQ96BM9 186 aa7.41□□□□□ -1.22
RTF1-204ENST00000558117 TCF25Q9BQ70 676 aa7.41□□□□□ -1.22
RTF1-204ENST00000558117 CCM2LQ9NUG4 571 aaPredicted RBP7.41□□□□□ -1.22
RTF1-204ENST00000558117 MYRFQ9Y2G1 1151 aa7.41□□□□□ -1.22
RTF1-204ENST00000558117 ALPK3Q96L96 1907 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 CAPN14A8MX76 684 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 C1QTNF3-AMACRE9PGA6 284 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 TCERG1O14776 1098 aaKnown RBP7.4□□□□□ -1.22
RTF1-204ENST00000558117 NRP1O14786 923 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 FYB1O15117 783 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 EIF5BO60841 1220 aaKnown RBP7.4□□□□□ -1.22
RTF1-204ENST00000558117 SGPL1O95470 568 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 IBSPP21815 317 aaPredicted RBP7.4□□□□□ -1.22
RTF1-204ENST00000558117 RPS12P25398 132 aaKnown RBP7.4□□□□□ -1.22
RTF1-204ENST00000558117 IL6STP40189 918 aaPredicted RBP7.4□□□□□ -1.22
RTF1-204ENST00000558117 KRTAP10-2P60368 255 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 SPIDRQ14159 915 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 PUM1Q14671 1186 aaKnown RBP eCLIP7.4□□□□□ -1.22
RTF1-204ENST00000558117 ZNF530Q6P9A1 599 aaPredicted RBP7.4□□□□□ -1.22
RTF1-204ENST00000558117 MSL3Q8N5Y2 521 aaKnown RBP7.4□□□□□ -1.22
RTF1-204ENST00000558117 SH3RF3Q8TEJ3 882 aaPredicted RBP7.4□□□□□ -1.22
RTF1-204ENST00000558117 EDAQ92838 391 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 RAX2Q96IS3 184 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 MENTQ9BUN1 341 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 ARHGAP39Q9C0H5 1083 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 DNAJC28Q9NX36 388 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 SCAF8Q9UPN6 1271 aaKnown RBP7.4□□□□□ -1.22
RTF1-204ENST00000558117 KIF7Q2M1P5 1343 aa7.4□□□□□ -1.22
RTF1-204ENST00000558117 CHD6Q8TD26 2715 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 RIC1Q4ADV7 1423 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 UBE2QL1A1L167 161 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 ALG1L2C9J202 215 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 MTSS1O43312 755 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 ALDH1A2O94788 518 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 NPEPPSP55786 919 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 UBE3CQ15386 1083 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 MUM1Q2TAK8 710 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 SPDYAQ5MJ70 313 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 SYDE2Q5VT97 1194 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 CLEC4GQ6UXB4 293 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 TAS1R1Q7RTX1 841 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 CMTM4Q8IZR5 234 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 ZNF808Q8N4W9 903 aaPredicted RBP7.39□□□□□ -1.23
RTF1-204ENST00000558117 SUPT20HQ8NEM7 779 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 AUTS2Q8WXX7 1259 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 MTMR8Q96EF0 704 aa7.39□□□□□ -1.23
RTF1-204ENST00000558117 PAWRQ96IZ0 340 aaKnown RBP7.39□□□□□ -1.23
RTF1-204ENST00000558117 CHMP4AQ9BY43 222 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms