RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 WDR81Q562E7 1941 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 GHRP10912 638 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 MAGEA4P43358 317 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 HIRAP54198 1017 aaPredicted RBP13.65□□□□□ -0.22
LDLR-207ENST00000558013 NRLP54845 237 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 WDR4P57081 412 aaKnown RBP13.65□□□□□ -0.22
LDLR-207ENST00000558013 DYNLT1P63172 113 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 ORC1Q13415 861 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 SMTNL2Q2TAL5 461 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 MICALL2Q8IY33 904 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 CCDC63Q8NA47 563 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.65□□□□□ -0.22
LDLR-207ENST00000558013 PRCCQ92733 491 aaPredicted RBP13.65□□□□□ -0.22
LDLR-207ENST00000558013 TMEM121Q9BTD3 319 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 STK32BQ9NY57 414 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 L3MBTL1Q9Y468 752 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 CNTNAP2Q9UHC6 1331 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 RASA4BC9J798 803 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 RASA4O43374 803 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 MGRN1O60291 552 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 ZC3H11AO75152 810 aaKnown RBP eCLIP13.65□□□□□ -0.22
LDLR-207ENST00000558013 IFNB1P01574 187 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 SUPT20HL2P0C7V6 817 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 PECAM1P16284 738 aaPredicted RBP13.65□□□□□ -0.22
LDLR-207ENST00000558013 PTPRAP18433 802 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 STX2P32856 288 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 OSTNP61366 133 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 SUPT20HL1Q3ZLR7 823 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 XKR3Q5GH77 459 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 KCNT1Q5JUK3 1230 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 LIN9Q5TKA1 542 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 FEZF2Q8TBJ5 459 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 GRK7Q8WTQ7 553 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 CKAP2Q8WWK9 683 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 MTMR12Q9C0I1 747 aa13.65□□□□□ -0.22
LDLR-207ENST00000558013 MYBL1P10243 752 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 ARSEP51690 589 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 MYL6P60660 151 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 NCALDP61601 193 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 GPS1Q13098 491 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 WDR72Q3MJ13 1102 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 KATNAL2Q8IYT4 538 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 C4orf33Q8N1A6 199 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 ANKLE1Q8NAG6 615 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 ZNF280CQ8ND82 737 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 RDM1Q8NG50 284 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 TFAP2BQ92481 460 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 FAM81BQ96LP2 452 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 PORCNQ9H237 461 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 SLCO1B3Q9NPD5 702 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 PPP1R1BQ9UD71 204 aaPredicted RBP13.64□□□□□ -0.23
LDLR-207ENST00000558013 PSME4Q14997 1843 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 A0A0B4J269 797 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 SPATA31C2B4DYI2 1134 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 LIASO43766 372 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 ATP6V1G2O95670 118 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 KRT1P04264 644 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 GJB1P08034 283 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 HMGB2P26583 209 aaKnown RBP13.64□□□□□ -0.23
LDLR-207ENST00000558013 PLCB3Q01970 1234 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 ACCSLQ4AC99 568 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 ZNF677Q86XU0 584 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 CCDC89Q8N998 374 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 SLITRK1Q96PX8 696 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 TCHPQ9BT92 498 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 C12orf65Q9H3J6 166 aaKnown RBP13.64□□□□□ -0.23
LDLR-207ENST00000558013 ZNF302Q9NR11 478 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 GRID1Q9ULK0 1009 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 PSTPIP1O43586 416 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 BPIFB4P59827 614 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 CAPSQ13938 189 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 PKN2Q16513 984 aaKnown RBP13.64□□□□□ -0.23
LDLR-207ENST00000558013 CROCCP2Q86T23 111 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 ANKMY2Q8IV38 441 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 WDTC1Q8N5D0 677 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 JDP2Q8WYK2 163 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 ECT2Q9H8V3 914 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 NOD2Q9HC29 1040 aa13.64□□□□□ -0.23
LDLR-207ENST00000558013 TMEM191CA6NGB0 347 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 OATP04181 439 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 TMEM191BP0C7N4 346 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 MMP8P22894 467 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 MARK3P27448 753 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 GMPSP49915 693 aaPredicted RBP13.63□□□□□ -0.23
LDLR-207ENST00000558013 SYCP2LQ5T4T6 812 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 SPATA21Q7Z572 469 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 PHF13Q86YI8 300 aaPredicted RBP13.63□□□□□ -0.23
LDLR-207ENST00000558013 EXD1Q8NHP7 514 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 MAML1Q92585 1016 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 PCYT2Q99447 389 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 DHX33Q9H6R0 707 aaKnown RBP13.63□□□□□ -0.23
LDLR-207ENST00000558013 EURLQ9NYK6 297 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 STYXL1Q9Y6J8 313 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 LRRD1A4D1F6 860 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 IGF2BP3O00425 579 aaKnown RBP eCLIP13.63□□□□□ -0.23
LDLR-207ENST00000558013 CDH16O75309 829 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 SRGAP2CP0DJJ0 459 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 TAC1P20366 129 aa13.63□□□□□ -0.23
LDLR-207ENST00000558013 RDXP35241 583 aaKnown RBP13.63□□□□□ -0.23
LDLR-207ENST00000558013 RTP1P59025 263 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms