RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 RBM41Q96IZ5 413 aaKnown RBP12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 FHDC1Q9C0D6 1143 aaPredicted RBP12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 DEFB129Q9H1M3 183 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 KMT5AQ9NQR1 393 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 LNPEPQ9UIQ6 1025 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 ALOX15BO15296 676 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 TYROBPO43914 113 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 PLA2G6O60733 806 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 ZWINTO95229 277 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 LINGO3P0C6S8 592 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 TROVE2P10155 538 aaKnown RBP eCLIP12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 MARK3P27448 753 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 GPS1Q13098 491 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 MAMLD1Q13495 774 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 FASTKD3Q14CZ7 662 aaKnown RBP12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 WDR44Q5JSH3 913 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 ANO7Q6IWH7 933 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 LVRNQ6Q4G3 990 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 CENPUQ71F23 418 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 TRMT1LQ7Z2T5 733 aaKnown RBP12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 RCOR2Q8IZ40 523 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 GPD1LQ8N335 351 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 ALLCQ8N6M5 410 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 VCPIP1Q96JH7 1222 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 KIFC3Q9BVG8 833 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 YIPF3Q9GZM5 350 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 TLE6Q9H808 572 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 DCLRE1BQ9H816 532 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 SSU72Q9NP77 194 aaKnown RBP12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 CYLDQ9NQC7 956 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 TBC1D22BQ9NU19 505 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 DNPEPQ9ULA0 475 aa12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 COL2A1P02458 1487 aaPredicted RBP12.49□□□□□ -0.41
VIPAS39-211ENST00000557658 RGPD3A6NKT7 1758 aaPredicted RBP12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 RGPD4Q7Z3J3 1758 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 TLR3O15455 904 aaKnown RBP12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 TJP3O95049 919 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 MYCNP04198 464 aaPredicted RBP12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 PTDSS1P48651 473 aaKnown RBP12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 PSMC5P62195 406 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 SPP2Q13103 211 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 UGCGQ16739 394 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 CCDC142Q17RM4 750 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 HP1BP3Q5SSJ5 553 aaPredicted RBP12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 ZFYVE27Q5T4F4 411 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 KAZNQ674X7 775 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 CAPN12Q6ZSI9 719 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 ZBED8Q8IZ13 594 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 GLIS1Q8NBF1 620 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 IL31RAQ8NI17 732 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 DENND2DQ9H6A0 471 aaPredicted RBP12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 ANKEF1Q9NU02 776 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 TCEAL9Q9UHQ7 104 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 UBIAD1Q9Y5Z9 338 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 THSD7AQ9UPZ6 1657 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 NFASCO94856 1347 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 H0Y3Z8 333 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 ZSCAN5DPP0CG00 497 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 ACADSP16219 412 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 ATP4AP20648 1035 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 MTMR1Q13613 665 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 SEPT7Q16181 437 aaKnown RBP12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 PLA2G4FQ68DD2 849 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 CC2D2BQ6DHV5 1058 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 PLEKHA7Q6IQ23 1121 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 PPP1R2P3Q6NXS1 205 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 SLC39A4Q6P5W5 647 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 APLFQ8IW19 511 aaPredicted RBP12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 CFAP61Q8NHU2 1237 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 TTC8Q8TAM2 541 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 DNAJC9Q8WXX5 260 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 MRRFQ96E11 262 aaKnown RBP12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 NPHS2Q9NP85 383 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 ANKFY1Q9P2R3 1169 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 FEM1BQ9UK73 627 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 DRG1Q9Y295 367 aaKnown RBP12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 SCN9AQ15858 1988 aa12.48□□□□□ -0.41
VIPAS39-211ENST00000557658 A0A1W2PPM1 405 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 PI4K2BG5E9Z4 385 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 ENTPD5O75356 428 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 KRT10P13645 584 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 ATF7P17544 494 aaPredicted RBP12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 DSG3P32926 999 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 CTCFP49711 727 aaPredicted RBP12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 NOMO3P69849 1222 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 ZYXQ15942 572 aaKnown RBP12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 MTDHQ86UE4 582 aaKnown RBP12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 PHF13Q86YI8 300 aaPredicted RBP12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 SPIRE2Q8WWL2 714 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 SLITRK1Q96PX8 696 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 TUBB6Q9BUF5 446 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 MAK16Q9BXY0 300 aaKnown RBP12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 KLHL11Q9NVR0 708 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 COL20A1Q9P218 1284 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 STOML1Q9UBI4 398 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 IP6K2Q9UHH9 426 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 CCPG1Q9ULG6 757 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 SHOC2Q9UQ13 582 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 LRRD1A4D1F6 860 aa12.47□□□□□ -0.41
VIPAS39-211ENST00000557658 EIF4E1BA6NMX2 242 aaKnown RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms