RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SMAPO00193 183 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 TYROBPO43914 113 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 TPBGLP0DKB5 382 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 TROVE2P10155 538 aaKnown RBP eCLIP17.2■□□□□ 0.34
SHMT2-231ENST00000557433 TSHRP16473 764 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 CA4P22748 312 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 PHBP35232 272 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 NOMO3P69849 1222 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 MRPS35P82673 323 aaKnown RBP17.2■□□□□ 0.34
SHMT2-231ENST00000557433 PSMD6Q15008 389 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 TSNAXIP1Q2TAA8 658 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 SEPT14Q6ZU15 432 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 FEZF2Q8TBJ5 459 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 MICAL1Q8TDZ2 1067 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 SLC7A6OSQ96CW6 309 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-231ENST00000557433 SENP7Q9BQF6 1050 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 GPRC5CQ9NQ84 441 aa17.2■□□□□ 0.34
SHMT2-231ENST00000557433 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.2■□□□□ 0.343e-6■■■■■ 44
SHMT2-231ENST00000557433 TOPORSQ9NS56 1045 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-231ENST00000557433 ATP6V1C1P21283 382 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 GCKP35557 465 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 TAS2R40P59535 323 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 SATB1Q01826 763 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 ZACNQ401N2 412 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 EFHC2Q5JST6 749 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 KCNN1Q92952 543 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 NKD2Q969F2 451 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-231ENST00000557433 TBC1D10AQ9BXI6 508 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 KIAA1683Q9H0B3 1180 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 DCLRE1BQ9H816 532 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 PCDH9Q9HC56 1237 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 PKD2L1Q9P0L9 805 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 ZFATQ9P243 1243 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 CNTN6Q9UQ52 1028 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 TM9SF1O15321 606 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 TLR3O15455 904 aaKnown RBP17.19■□□□□ 0.34
SHMT2-231ENST00000557433 EXTL3O43909 919 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 TBC1D12O60347 775 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 SPAG7O75391 227 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 ITGAVP06756 1048 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 ACADSP16219 412 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 TBXAS1P24557 533 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-231ENST00000557433 TARSP26639 723 aaKnown RBP17.19■□□□□ 0.34
SHMT2-231ENST00000557433 PKN2Q16513 984 aaKnown RBP17.19■□□□□ 0.34
SHMT2-231ENST00000557433 SLC39A4Q6P5W5 647 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 LONP2Q86WA8 852 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 CCDC125Q86Z20 511 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 MCPH1Q8NEM0 835 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 ASAP3Q8TDY4 903 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 FAM151AQ8WW52 585 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 SLITRK1Q96PX8 696 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 NUDCD1Q96RS6 583 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 DDX56Q9NY93 547 aaKnown RBP17.19■□□□□ 0.34
SHMT2-231ENST00000557433 HAO1Q9UJM8 370 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 ZNF148Q9UQR1 794 aa17.19■□□□□ 0.34
SHMT2-231ENST00000557433 POC1B-GALNT4F8VUJ3 575 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 T-ENOLP0DO92 83 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 PECAM1P16284 738 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-231ENST00000557433 MARK3P27448 753 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 ARSEP51690 589 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 RAD23BP54727 409 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 VCPP55072 806 aaKnown RBP17.18■□□□□ 0.34
SHMT2-231ENST00000557433 GEMIN4P57678 1058 aaKnown RBP17.18■□□□□ 0.34
SHMT2-231ENST00000557433 TAP1Q03518 808 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 SPP2Q13103 211 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 KLHL38Q2WGJ6 581 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 RNASEH2BQ5TBB1 312 aaKnown RBP17.18■□□□□ 0.34
SHMT2-231ENST00000557433 XRRA1Q6P2D8 792 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 KIRREL3Q8IZU9 778 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 ZNF75CPQ92670 426 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-231ENST00000557433 C11orf70Q9BRQ4 267 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 VPS37BQ9H9H4 285 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 COL20A1Q9P218 1284 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 ANKFY1Q9P2R3 1169 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 ZFP69BQ9UJL9 534 aa17.18■□□□□ 0.34
SHMT2-231ENST00000557433 HNRNPDLO14979 420 aaKnown RBP17.17■□□□□ 0.34
SHMT2-231ENST00000557433 RPA3P35244 121 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-231ENST00000557433 UGCGQ16739 394 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 NLRP9Q7RTR0 991 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 CLEC4DQ8WXI8 215 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 FNBP1Q96RU3 617 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 VPS11Q9H270 941 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 STOML1Q9UBI4 398 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 EFR3BQ9Y2G0 817 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.17■□□□□ 0.34
SHMT2-231ENST00000557433 HLA-DRAP01903 254 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 CALB1P05937 261 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 CD58P19256 250 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 ACO1P21399 889 aaKnown RBP17.17■□□□□ 0.34
SHMT2-231ENST00000557433 CAP2P40123 477 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 MRPS9P82933 396 aaKnown RBP17.17■□□□□ 0.34
SHMT2-231ENST00000557433 GPS1Q13098 491 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 CUL2Q13617 745 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 LBRQ14739 615 aaKnown RBP17.17■□□□□ 0.34
SHMT2-231ENST00000557433 ZRSR2Q15696 482 aaKnown RBP17.17■□□□□ 0.34
SHMT2-231ENST00000557433 SGSM1Q2NKQ1 1148 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 OTOAQ7RTW8 1153 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 ATP11CQ8NB49 1132 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 IL31RAQ8NI17 732 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 PRMT6Q96LA8 375 aaPredicted RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms