RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 OVOS1Q6IE37 1185 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 FOXR2Q6PJQ5 311 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 RSPO2Q6UXX9 243 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-228ENST00000557302 METTL23Q86XA0 190 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 ZC3H3Q8IXZ2 948 aaKnown RBP14.63□□□□□ -0.07
SHMT2-228ENST00000557302 ZNF516Q92618 1163 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 BORCS6Q96GS4 357 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 HPDLQ96IR7 371 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 MAN1C1Q9NR34 630 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 FBXL5Q9UKA1 691 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 IKBKBO14920 756 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 TBC1D4O60343 1298 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 HUS1O60921 280 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 CYP11A1P05108 521 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 KCNQ1P51787 676 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 SMAD4Q13485 552 aaKnown RBP14.62□□□□□ -0.07
SHMT2-228ENST00000557302 RAB33AQ14088 237 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 SCARA3Q6AZY7 606 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 PTCRAQ6ISU1 281 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-228ENST00000557302 SLC8B1Q6J4K2 584 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 TTI2Q6NXR4 508 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 SYCE2Q6PIF2 218 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 MLKLQ8NB16 471 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 SMRP1Q8NCR6 262 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-228ENST00000557302 OXCT2Q9BYC2 517 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-228ENST00000557302 PLEKHA4Q9H4M7 779 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 FAM50BQ9Y247 325 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 SNX9Q9Y5X1 595 aa14.62□□□□□ -0.07
SHMT2-228ENST00000557302 SCN1AP35498 2009 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 OR6C75A6NL08 312 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 SPATA31D3P0C874 917 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 TRIM49P0CI25 452 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 TRIM49CP0CI26 452 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 ARPP19P56211 112 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 STX17P56962 302 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 ROR1Q01973 937 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 TJAP1Q5JTD0 557 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 C1orf220Q5T0J3 134 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 TDRD10Q5VZ19 366 aaKnown RBP14.61□□□□□ -0.07
SHMT2-228ENST00000557302 WSCD1Q658N2 575 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 LILRA6Q6PI73 481 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 SPATA31D4Q6ZUB0 917 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 KREMEN2Q8NCW0 462 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 HDAC7Q8WUI4 952 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 CEP63Q96MT8 703 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 DUSP9Q99956 384 aaKnown RBP14.61□□□□□ -0.07
SHMT2-228ENST00000557302 APOL5Q9BWW9 433 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 SFXN1Q9H9B4 322 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 GDAP2Q9NXN4 497 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 FBXW11Q9UKB1 542 aa14.61□□□□□ -0.07
SHMT2-228ENST00000557302 GRXCR2A6NFK2 248 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 MBTPS2O43462 519 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 STX10O60499 249 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 CLSTN1O94985 981 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 CST3P01034 146 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-228ENST00000557302 C4BPAP04003 597 aaKnown RBP14.6□□□□□ -0.07
SHMT2-228ENST00000557302 CPB1P15086 417 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 ATICP31939 592 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 NLRP12P59046 1061 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 ITIH3Q06033 890 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 NCOA4Q13772 614 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 ZACNQ401N2 412 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 RARS2Q5T160 578 aaKnown RBP14.6□□□□□ -0.07
SHMT2-228ENST00000557302 CCDC183Q5T5S1 534 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 LIN9Q5TKA1 542 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 CES5AQ6NT32 575 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 RBM43Q6ZSC3 357 aaKnown RBP14.6□□□□□ -0.07
SHMT2-228ENST00000557302 SV2AQ7L0J3 742 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 FILIP1Q7Z7B0 1213 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 THEM5Q8N1Q8 247 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 TMEM86AQ8N2M4 240 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 PDCL2Q8N4E4 241 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 TOP6BLQ8N6T0 577 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 C12orf76Q8N812 135 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-228ENST00000557302 SYAP1Q96A49 352 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-228ENST00000557302 S1PR5Q9H228 398 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 ARMCX3Q9UH62 379 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-228ENST00000557302 DACH1Q9UI36 760 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 RWDD2AQ9UIY3 292 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 L1RE1Q9UN81 338 aa14.6□□□□□ -0.07
SHMT2-228ENST00000557302 WDR27A2RRH5 827 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 STAU1O95793 577 aaKnown RBP14.59□□□□□ -0.07
SHMT2-228ENST00000557302 BMP1P13497 986 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 GTF2H1P32780 548 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 GCLMP48507 274 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 MCCD1P59942 119 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-228ENST00000557302 MYL6P60660 151 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 PPP3CAQ08209 521 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 ZNF699Q32M78 642 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 DPCR1Q3MIW9 517 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 CCDC40Q4G0X9 1142 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 DCAF17Q5H9S7 520 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-228ENST00000557302 TPGS2Q68CL5 300 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 TMC5Q6UXY8 1006 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 C15orf39Q6ZRI6 1047 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 CMASQ8NFW8 434 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-228ENST00000557302 ZNF461Q8TAF7 563 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 SPATA18Q8TC71 538 aa14.59□□□□□ -0.07
SHMT2-228ENST00000557302 ADAM7Q9H2U9 754 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms