RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 GDPD5Q8WTR4 605 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 C7orf43Q8WVR3 580 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 PSKH2Q96QS6 385 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 Q9H521 79 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 C10orf88Q9H8K7 445 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 XAB2Q9HCS7 855 aaKnown RBP14.53□□□□□ -0.08
SHMT2-226ENST00000556825 OLFML3Q9NRN5 406 aa14.53□□□□□ -0.08
SHMT2-226ENST00000556825 DBNLQ9UJU6 430 aaKnown RBP14.53□□□□□ -0.08
SHMT2-226ENST00000556825 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.53□□□□□ -0.08
SHMT2-226ENST00000556825 FOXO6A8MYZ6 492 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 FOXD2O60548 495 aaPredicted RBP14.52□□□□□ -0.08
SHMT2-226ENST00000556825 SIN3BO75182 1162 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 C6orf222P0C671 652 aaPredicted RBP14.52□□□□□ -0.08
SHMT2-226ENST00000556825 PMLP29590 882 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 KRT6CP48668 564 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 NCKAP1LP55160 1127 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 EPHA7Q15375 998 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 RGS21Q2M5E4 152 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 LPCAT2Q7L5N7 544 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 RALYLQ86SE5 291 aaKnown RBP14.52□□□□□ -0.08
SHMT2-226ENST00000556825 SLC51BQ86UW2 128 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 SYN2Q92777 582 aaPredicted RBP14.52□□□□□ -0.08
SHMT2-226ENST00000556825 PSD2Q9BQI7 771 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 SHCBP1LQ9BZQ2 653 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 POU2F3Q9UKI9 436 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 KCNJ14Q9UNX9 436 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 RTCBQ9Y3I0 505 aaKnown RBP14.52□□□□□ -0.08
SHMT2-226ENST00000556825 SCINQ9Y6U3 715 aa14.52□□□□□ -0.08
SHMT2-226ENST00000556825 DDX60Q8IY21 1712 aaKnown RBP14.52□□□□□ -0.09
SHMT2-226ENST00000556825 ECM29Q5VYK3 1845 aa14.52□□□□□ -0.09
SHMT2-226ENST00000556825 LINC00854A0A1B0GVQ3 168 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 KRBA1A5PL33 1030 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 FAM47DPA6NHR8 397 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 B3GALNT1O75752 331 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 TRPA1O75762 1119 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 FKBP9O95302 570 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 HSPA2P54652 639 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 IFITM2Q01629 132 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 CHRNEQ04844 493 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 PDE4DQ08499 809 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 SNAPC2Q13487 334 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 EFTUD2Q15029 972 aaKnown RBP eCLIP14.51□□□□□ -0.094e-8■■■■■ 44
SHMT2-226ENST00000556825 RABL6Q3YEC7 729 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-226ENST00000556825 CCDC62Q6P9F0 684 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 ANKRD35Q8N283 1001 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 GALNT4Q8N4A0 578 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 SPOCK2Q92563 424 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 PEX13Q92968 403 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 SLC26A6Q9BXS9 759 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 PACSIN1Q9BY11 444 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 MARCH7Q9H992 704 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 TRPM3Q9HCF6 1732 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-226ENST00000556825 BICDL2A1A5D9 508 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 TM7SF2O76062 418 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 BMP15O95972 392 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 GCP02774 474 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 FDFT1P37268 417 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 NR5A1Q13285 461 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 PSMD6Q15008 389 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 PDK4Q16654 411 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 MAPK6Q16659 721 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 CCDC58Q4VC31 144 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 TJAP1Q5JTD0 557 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 EPM2AIP1Q7L775 607 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-226ENST00000556825 HEATR4Q86WZ0 1026 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 TMPRSS6Q8IU80 811 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 VGLL2Q8N8G2 317 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 HES6Q96HZ4 224 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 HAUS8Q9BT25 410 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 RNF38Q9H0F5 515 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 CABP5Q9NP86 173 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 SEPT10Q9P0V9 454 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 PPME1Q9Y570 386 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 IKBKGQ9Y6K9 419 aa14.51□□□□□ -0.09
SHMT2-226ENST00000556825 UBE2Q2LH0YL09 131 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 GNPATO15228 680 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 TCEA3O75764 348 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 DDHD2O94830 711 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 CTRB1P17538 263 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 SLC1A1P43005 524 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 CLK3P49761 638 aaKnown RBP14.5□□□□□ -0.09
SHMT2-226ENST00000556825 IST1P53990 364 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 MYBPC1Q00872 1141 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 NIPAL4Q0D2K0 466 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 CYP2A13Q16696 494 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 CTRB2Q6GPI1 263 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 CYP4V2Q6ZWL3 525 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-226ENST00000556825 OTOAQ7RTW8 1153 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 GLG1Q92896 1179 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 HPS1Q92902 700 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 SDCCAG3Q96C92 435 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 RANBP9Q96S59 729 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 OSBPL8Q9BZF1 889 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 CDH19Q9H159 772 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 SACM1LQ9NTJ5 587 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 LGALS13Q9UHV8 139 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 NR2E1Q9Y466 385 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 PVALEFA0A1B0GWK0 134 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 ZSCAN5BA6NJL1 495 aa14.5□□□□□ -0.09
SHMT2-226ENST00000556825 GOLGA8MH3BSY2 632 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms