RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 SDHBP21912 280 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 FCARP24071 287 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 KRT2P35908 639 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 TXKP42681 527 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 RPS9P46781 194 aaKnown RBP12.43□□□□□ -0.42
VPS33B-204ENST00000554660 CLCNKBP51801 687 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 TUBB4BP68371 445 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 ADCY1Q08828 1119 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 PNOCQ13519 176 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 PRPF4BQ13523 1007 aaKnown RBP12.43□□□□□ -0.42
VPS33B-204ENST00000554660 TUBB2AQ13885 445 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 C3orf58Q8NDZ4 430 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 TSC1Q92574 1164 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 TNFRSF25Q93038 417 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 GSDMAQ96QA5 445 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 TUBB2BQ9BVA1 445 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 KIFC3Q9BVG8 833 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 FZD8Q9H461 694 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 DNAI1Q9UI46 699 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 GMEB2Q9UKD1 530 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.43□□□□□ -0.42
VPS33B-204ENST00000554660 SPTBN2O15020 2390 aa12.43□□□□□ -0.42
VPS33B-204ENST00000554660 PRR5-ARHGAP8B1AHC4 643 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 TMEM189-UBE2V1I3L0A0 370 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 NCAM2O15394 837 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 KIF20AO95235 890 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 PRKCBP05771 671 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 SLFN14P0C7P3 912 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 TDGF1P13385 188 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 BRCC3P46736 316 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 ARHGAP8P85298 464 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 ROR1Q01973 937 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 SPEM2Q0P670 501 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 MAPK6Q16659 721 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 FAM187BQ17R55 369 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 SPECC1LQ69YQ0 1117 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 CD300LGQ6UXG3 332 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 DNASE1L2Q92874 299 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 ERCC4Q92889 916 aaPredicted RBP12.42□□□□□ -0.42
VPS33B-204ENST00000554660 ELSPBP1Q96BH3 223 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 TCEAL4Q96EI5 215 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 BORCS6Q96GS4 357 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 PANX2Q96RD6 677 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 NELL2Q99435 816 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 CORO1BQ9BR76 489 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 ADPGKQ9BRR6 497 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 RTKNQ9BST9 563 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 CCDC113Q9H0I3 377 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 GDE1Q9NZC3 331 aa12.42□□□□□ -0.42
VPS33B-204ENST00000554660 MRPS17Q9Y2R5 130 aaKnown RBP12.42□□□□□ -0.42
VPS33B-204ENST00000554660 ITIH6Q6UXX5 1313 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 A0A1B0GTH6 734 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 WDR27A2RRH5 827 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 ACACBO00763 2458 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 TBC1D4O60343 1298 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 LRG1P02750 347 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 SPATA31C1P0DKV0 1188 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 ATP1A3P13637 1013 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 H2AFXP16104 143 aaPredicted RBP12.41□□□□□ -0.42
VPS33B-204ENST00000554660 ATP2B1P20020 1258 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 FECHP22830 423 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 CCR2P41597 374 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 ARPP19P56211 112 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 FAM78AQ5JUQ0 283 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 PRSS36Q5K4E3 855 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 SPATA1Q5VX52 437 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 PRR23BQ6ZRT6 265 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 ANKS3Q6ZW76 656 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 TMEM139Q8IV31 216 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 ZNF687Q8N1G0 1237 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 MCPH1Q8NEM0 835 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 ZNF592Q92610 1267 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 CLIC6Q96NY7 704 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 PPP1R10Q96QC0 940 aaKnown RBP12.41□□□□□ -0.42
VPS33B-204ENST00000554660 C2orf40Q9H1Z8 148 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 CHRDQ9H2X0 955 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 BRD9Q9H8M2 597 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 FANCLQ9NW38 375 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS33B-204ENST00000554660 BACE2Q9Y5Z0 518 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 TICRRQ7Z2Z1 1910 aa12.41□□□□□ -0.42
VPS33B-204ENST00000554660 NCANO14594 1321 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 ARHGEF37A1IGU5 675 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 ACKR2O00590 384 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 PRRG1O14668 218 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 MED24O75448 989 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 ADRB1P08588 477 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 BMP6P22004 513 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 SOX4Q06945 474 aaPredicted RBP12.4□□□□□ -0.42
VPS33B-204ENST00000554660 SPAG1Q07617 926 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 UPP1Q16831 310 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 ST3GAL2Q16842 350 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 DCAF4L1Q3SXM0 396 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 ARL6IP4Q66PJ3 421 aaKnown RBP12.4□□□□□ -0.42
VPS33B-204ENST00000554660 CATSPER3Q86XQ3 398 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 REXO1L1PQ8IX06 675 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 CEP120Q8N960 986 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 DEPTORQ8TB45 409 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 MTMR9Q96QG7 549 aa12.4□□□□□ -0.42
VPS33B-204ENST00000554660 FAM126AQ9BYI3 521 aaPredicted RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms