RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-217	ENST00000546164	TCEAL8	Q8IYN2	117 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	ZDHHC14	Q8IZN3	488 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	GUF1	Q8N442	669 aa	Known RBP	12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	SPATA20	Q8TB22	786 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	SLC7A14	Q8TBB6	771 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	NOC3L	Q8WTT2	800 aa	Known RBP	12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	ANKRD36BP1	Q96IX9	119 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	MFSD14A	Q96MC6	490 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	MTMR12	Q9C0I1	747 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	EPHX3	Q9H6B9	360 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	AFF4	Q9UHB7	1163 aa	Known RBP	12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	TRAF3IP3	Q9Y228	551 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	TIMM13	Q9Y5L4	95 aa	Predicted RBP	12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	CLUH	O75153	1309 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	PTPRJ	Q12913	1337 aa		12.81	□□□□□ -0.36
YBX3-217	ENST00000546164	SCN1A	P35498	2009 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	KPNA7	A9QM74	516 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	EXOC3	O60645	756 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	XYLB	O75191	536 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	ITGB3	P05106	788 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	RBP5	P82980	135 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	GPR17	Q13304	367 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	NFIL3	Q16649	462 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	OVOS1	Q6IE37	1185 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	PLCD3	Q8N3E9	789 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	TDRD5	Q8NAT2	981 aa	Known RBP	12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	OR5B17	Q8NGF7	314 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	SPATA18	Q8TC71	538 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	GSDMA	Q96QA5	445 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	C1QTNF1	Q9BXJ1	281 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	GZF1	Q9H116	711 aa	Predicted RBP	12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	PIDD1	Q9HB75	910 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	RMND1	Q9NWS8	449 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	GDAP2	Q9NXN4	497 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	SIX4	Q9UIU6	781 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	AGAP1	Q9UPQ3	857 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	DENND4A	Q7Z401	1863 aa		12.8	□□□□□ -0.36
YBX3-217	ENST00000546164	CYB561D2	O14569	222 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	TNNC2	P02585	160 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	NR3C1	P04150	777 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	CPB1	P15086	417 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	ELF1	P32519	619 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	ARPP19	P56211	112 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	CLDN10	P78369	228 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	PNOC	Q13519	176 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	COBLL1	Q53SF7	1204 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	CSGALNACT2	Q8N6G5	542 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	RDH13	Q8NBN7	331 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	ACSF2	Q96CM8	615 aa	Predicted RBP	12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	FAM84A	Q96KN4	292 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	FNBP1	Q96RU3	617 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	CGRRF1	Q99675	332 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	TSHZ2	Q9NRE2	1034 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	MUTYH	Q9UIF7	546 aa		12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	HOOK1	Q9UJC3	728 aa	Known RBP	12.79	□□□□□ -0.36
YBX3-217	ENST00000546164	C2orf16	Q68DN1	1984 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	PRRG1	O14668	218 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	MAPK13	O15264	365 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	CCL16	O15467	120 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	CALU	O43852	315 aa	Predicted RBP	12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	N4BP1	O75113	896 aa	Known RBP	12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	SMC2	O95347	1197 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	SEC24A	O95486	1093 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	DLAT	P10515	647 aa	Known RBP	12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	AP3M2	P53677	418 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	ADCY1	Q08828	1119 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	PTPN21	Q16825	1174 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	ZCWPW2	Q504Y3	356 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	WSCD1	Q658N2	575 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	LMBRD2	Q68DH5	695 aa	Predicted RBP	12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	SCARA3	Q6AZY7	606 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	RNF19B	Q6ZMZ0	732 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	TRAPPC11	Q7Z392	1133 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	LIMS2	Q7Z4I7	341 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	METTL23	Q86XA0	190 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	OR10T2	Q8NGX3	314 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	CCDC127	Q96BQ5	260 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	RTP3	Q9BQQ7	232 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	GTPBP4	Q9BZE4	634 aa	Known RBP	12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	CYP4F11	Q9HBI6	524 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	AVEN	Q9NQS1	362 aa	Predicted RBP	12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	EPS15L1	Q9UBC2	864 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	HSFX1	Q9UBD0	423 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	INSL5	Q9Y5Q6	135 aa		12.78	□□□□□ -0.36
YBX3-217	ENST00000546164	KIN	O60870	393 aa	Known RBP	12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	GPR37L1	O60883	481 aa		12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	HUS1	O60921	280 aa		12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	GADD45B	O75293	160 aa	Predicted RBP	12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	VNN2	O95498	520 aa		12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	STAU1	O95793	577 aa	Known RBP	12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	LRG1	P02750	347 aa		12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	KRT19	P08727	400 aa		12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	TNNI1	P19237	187 aa		12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	SP100	P23497	879 aa	Predicted RBP	12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	ENPEP	Q07075	957 aa		12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	SMARCB1	Q12824	385 aa		12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	MYO1E	Q12965	1108 aa		12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	ZNF658	Q5TYW1	1059 aa	Predicted RBP	12.77	□□□□□ -0.37
YBX3-217	ENST00000546164	CENPP	Q6IPU0	288 aa		12.77	□□□□□ -0.37

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