RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 FAM47CQ5HY64 1035 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 RASGEF1CQ8N431 466 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 DRC3Q9H069 523 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 TRABDQ9H4I3 376 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 WDR35Q9P2L0 1181 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 PCSK1NQ9UHG2 260 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 PNMA3Q9UL41 463 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 SSX2IPQ9Y2D8 614 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 USP15Q9Y4E8 981 aaPredicted RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 TMEM120BA0PK00 339 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 ANKRD63C9JTQ0 380 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 VWA5AO00534 786 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 APOL1O14791 398 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 RIPK2O43353 540 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 LPXNO60711 386 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 BAG2O95816 211 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 MAGEA4P43358 317 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 RPL21P46778 160 aaKnown RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 DEUP1Q05D60 604 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 NFX1Q12986 1120 aaKnown RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 ANKRD20A4Q4UJ75 823 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 ANKRD20A8PQ5CZ79 823 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 ANKRD20A2Q5SQ80 823 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 FAM102AQ5T9C2 384 aaPredicted RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 ANKRD20A1Q5TYW2 823 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 CCDC125Q86Z20 511 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 ANKMY2Q8IV38 441 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 CDKL3Q8IVW4 592 aaPredicted RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 MCOLN2Q8IZK6 566 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 MBOAT7Q96N66 472 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 PSMC3IPQ9P2W1 217 aaPredicted RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 ARHGAP42A6NI28 874 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 RASSF10A6NK89 507 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 TISP43B9A030 160 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 COPEO14579 308 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 CDH16O75309 829 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 ZBTB7AO95365 584 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 ADRB2P07550 413 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 OAZ1P54368 228 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 SOX10P56693 466 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 EIF3EP60228 445 aaKnown RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 MKRN4PQ13434 485 aaPredicted RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 ATF7IP2Q5U623 682 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 IER5Q5VY09 327 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 CAPRIN2Q6IMN6 1127 aaKnown RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 GPAT2Q6NUI2 795 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 DPY19L2Q6NUT2 758 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 ZNF449Q6P9G9 518 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 APLFQ8IW19 511 aaPredicted RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 OR6B3Q8NGW1 331 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 SEPT1Q8WYJ6 367 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 TATDN2Q93075 761 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 ZKSCAN4Q969J2 545 aaPredicted RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 SH3GL2Q99962 352 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 EIF2AQ9BY44 585 aaKnown RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 FRMD8P1Q9BZ68 369 aaPredicted RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 GCOM2Q9BZD3 368 aaPredicted RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 CCT8L1PA6NM43 557 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 PLSCR1O15162 318 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 PROSCO94903 275 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 TCF7P36402 384 aaPredicted RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 HSD17B4P51659 736 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 SESN3P58005 492 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 PPP3CAQ08209 521 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 ITGB3BPQ13352 177 aaPredicted RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 SH3BP5LQ7L8J4 393 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 C1orf131Q8NDD1 294 aaKnown RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 SCFD2Q8WU76 684 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 CCDC97Q96F63 343 aaPredicted RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 THOC1Q96FV9 657 aaKnown RBP6.1□□□□□ -1.43
VPS50-220ENST00000544910 TRIM55Q9BYV6 548 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 DCLK3Q9C098 648 aa6.1□□□□□ -1.43
VPS50-220ENST00000544910 TMEM150BA6NC51 233 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 ASB14A6NK59 587 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 FANCGO15287 622 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 DDX3YO15523 660 aaKnown RBP6.09□□□□□ -1.43
VPS50-220ENST00000544910 KRT37O76014 449 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 DSG3P32926 999 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 GCNT1Q02742 428 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 PPP2R5DQ14738 602 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 CYP4A22Q5TCH4 519 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 BZW1Q7L1Q6 419 aaKnown RBP6.09□□□□□ -1.43
VPS50-220ENST00000544910 SAMD7Q7Z3H4 446 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 WDR49Q8IV35 697 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 LRRC34Q8IZ02 419 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 BEST2Q8NFU1 509 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 ATG4AQ8WYN0 398 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 ABTB1Q969K4 478 aaPredicted RBP6.09□□□□□ -1.43
VPS50-220ENST00000544910 SGSM3Q96HU1 749 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 ZNF668Q96K58 619 aaPredicted RBP6.09□□□□□ -1.43
VPS50-220ENST00000544910 INPP4AQ96PE3 977 aaPredicted RBP6.09□□□□□ -1.43
VPS50-220ENST00000544910 CDC42EP4Q9H3Q1 356 aaKnown RBP6.09□□□□□ -1.43
VPS50-220ENST00000544910 SLC40A1Q9NP59 571 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 XPO7Q9UIA9 1087 aaKnown RBP6.09□□□□□ -1.43
VPS50-220ENST00000544910 FAM47DPA6NHR8 397 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 PYGMP11217 842 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 ASTE1Q2TB18 679 aaPredicted RBP6.09□□□□□ -1.43
VPS50-220ENST00000544910 C1orf228Q6PIY5 440 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 TRPM8Q7Z2W7 1104 aa6.09□□□□□ -1.43
VPS50-220ENST00000544910 AMIGO3Q86WK7 504 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms