RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 AGTP01019 485 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 UNGP13051 313 aaPredicted RBP14.34□□□□□ -0.11
PTPN1-202ENST00000541713 RGS7P49802 495 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 IRX4P78413 519 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 ATP11AP98196 1134 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 ALCAMQ13740 583 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 C6orf89Q6UWU4 347 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 MCPH1Q8NEM0 835 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 SEC14L1Q92503 715 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 KLHL29Q96CT2 875 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 MFSD14AQ96MC6 490 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 ECT2Q9H8V3 914 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 PIH1D1Q9NWS0 290 aaKnown RBP14.34□□□□□ -0.11
PTPN1-202ENST00000541713 PROSCO94903 275 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 TMEM191BP0C7N4 346 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 TNFAIP1Q13829 316 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 PPP2R5EQ16537 467 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 ACCSLQ4AC99 568 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 DALRD3Q5D0E6 543 aaKnown RBP14.34□□□□□ -0.11
PTPN1-202ENST00000541713 CRELD2Q6UXH1 353 aaPredicted RBP14.34□□□□□ -0.11
PTPN1-202ENST00000541713 FAM83AQ86UY5 434 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 CNPY4Q8N129 248 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 TFAP2BQ92481 460 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 ZNF317Q96PQ6 595 aaPredicted RBP14.34□□□□□ -0.11
PTPN1-202ENST00000541713 GPATCH2LQ9NWQ4 482 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 AFG3L2Q9Y4W6 797 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 FSBPO95073 299 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 RFX1P22670 979 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 ZACNQ401N2 412 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 SH3PXD2AQ5TCZ1 1133 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 VSTM1Q6UX27 236 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 JOSD2Q8TAC2 188 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 CCT6BQ92526 530 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 ZNF214Q9UL59 606 aaPredicted RBP14.33□□□□□ -0.12
PTPN1-202ENST00000541713 COL4A5P29400 1685 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 SYNJ2BP-COX16A0A087WUM0 186 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 IGF2BP3O00425 579 aaKnown RBP eCLIP14.33□□□□□ -0.12
PTPN1-202ENST00000541713 FSCN2O14926 492 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 TP73O15350 636 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 P4HA2O15460 535 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 NUDT17P0C025 328 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 PSMA2P25787 234 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 RFC1P35251 1148 aaPredicted RBP14.33□□□□□ -0.12
PTPN1-202ENST00000541713 TCF7P36402 384 aaPredicted RBP14.33□□□□□ -0.12
PTPN1-202ENST00000541713 NFIL3Q16649 462 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 NPNTQ6UXI9 565 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 ERICH1Q86X53 443 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 VSIG1Q86XK7 387 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 FMNL3Q8IVF7 1028 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 ABRAQ8N0Z2 381 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.33□□□□□ -0.121e-21■■■■■ 96
PTPN1-202ENST00000541713 OTUD5Q96G74 571 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 TEX13BQ9BXU2 312 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 PITPNM3Q9BZ71 974 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 ACAD9Q9H845 621 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 CISHQ9NSE2 258 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 COX16Q9P0S2 106 aa14.33□□□□□ -0.12
PTPN1-202ENST00000541713 HSPA6P17066 643 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 STAT5BP51692 787 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 NOMO3P69849 1222 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 MYO1EQ12965 1108 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 STXBP2Q15833 593 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 AMHR2Q16671 573 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 HSDL1Q3SXM5 330 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 XKR3Q5GH77 459 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 BSPRYQ5W0U4 402 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 PGM2Q96G03 612 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 GINM1Q9NU53 330 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 E2F8A0AVK6 867 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 AVILO75366 819 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 C4BPAP04003 597 aaKnown RBP14.32□□□□□ -0.12
PTPN1-202ENST00000541713 GDF10P55107 478 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 SLC20A2Q08357 652 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 MMRN1Q13201 1228 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 CAPSQ13938 189 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 C1orf228Q6PIY5 440 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 GIMAP7Q8NHV1 300 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 FEZF2Q8TBJ5 459 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 HEY1Q9Y5J3 304 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 C2orf71A6NGG8 1288 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 CST8O60676 142 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 OATP04181 439 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 SUPT20HL2P0C7V6 817 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 MAP2K2P36507 400 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 CETN2P41208 172 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 SUPT20HL1Q3ZLR7 823 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 EEF1DP3Q658K8 133 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 DENND1BQ6P3S1 775 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 CTAGE3PQ8IX95 158 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 CCDC89Q8N998 374 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 FAM71DQ8N9W8 422 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 STAMBPL1Q96FJ0 436 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 RUNDC3BQ96NL0 473 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 TRIM56Q9BRZ2 755 aaKnown RBP14.32□□□□□ -0.12
PTPN1-202ENST00000541713 LRRC19Q9H756 370 aa14.32□□□□□ -0.12
PTPN1-202ENST00000541713 SKAP2O75563 359 aaPredicted RBP14.31□□□□□ -0.12
PTPN1-202ENST00000541713 CXCL8P10145 99 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 ITIH2P19823 946 aa14.31□□□□□ -0.12
PTPN1-202ENST00000541713 TARSP26639 723 aaKnown RBP14.31□□□□□ -0.12
PTPN1-202ENST00000541713 FOXN2P32314 431 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms