RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-218ENST00000541586 TBC1D13Q9NVG8 400 aa29.76■■■□□ 2.36
CCM2-218ENST00000541586 CNTN3Q9P232 1028 aa29.76■■■□□ 2.36
CCM2-218ENST00000541586 KANSL3Q9P2N6 904 aa29.76■■■□□ 2.36
CCM2-218ENST00000541586 HCSTQ9UBK5 93 aa29.76■■■□□ 2.36
CCM2-218ENST00000541586 NUB1Q9Y5A7 615 aa29.76■■■□□ 2.36
CCM2-218ENST00000541586 PCDHA13Q9Y5I0 950 aa29.76■■■□□ 2.36
CCM2-218ENST00000541586 CITO14578 2027 aa29.76■■■□□ 2.35
CCM2-218ENST00000541586 ABL1P00519 1130 aa29.76■■■□□ 2.35
CCM2-218ENST00000541586 ANXA13P27216 316 aa29.76■■■□□ 2.35
CCM2-218ENST00000541586 USP8P40818 1118 aa29.76■■■□□ 2.35
CCM2-218ENST00000541586 HTRA4P83105 476 aaPredicted RBP29.76■■■□□ 2.35
CCM2-218ENST00000541586 TMEM132DQ14C87 1099 aa29.76■■■□□ 2.35
CCM2-218ENST00000541586 ARHGAP29Q52LW3 1261 aa29.76■■■□□ 2.35
CCM2-218ENST00000541586 SPOUT1Q5T280 376 aaKnown RBP29.76■■■□□ 2.35
CCM2-218ENST00000541586 C1orf127Q8N9H9 656 aa29.76■■■□□ 2.35
CCM2-218ENST00000541586 FAM193BQ96PV7 902 aaPredicted RBP29.76■■■□□ 2.35
CCM2-218ENST00000541586 TFR2Q9UP52 801 aa29.76■■■□□ 2.35
CCM2-218ENST00000541586 C2CD2Q9Y426 696 aa29.76■■■□□ 2.35
CCM2-218ENST00000541586 TRIP11Q15643 1979 aa29.75■■■□□ 2.35
CCM2-218ENST00000541586 PBX2P40425 430 aa29.75■■■□□ 2.35
CCM2-218ENST00000541586 VAV2P52735 878 aa29.75■■■□□ 2.35
CCM2-218ENST00000541586 SGSM1Q2NKQ1 1148 aa29.75■■■□□ 2.35
CCM2-218ENST00000541586 XKR4Q5GH76 650 aa29.75■■■□□ 2.35
CCM2-218ENST00000541586 SIX4Q9UIU6 781 aa29.75■■■□□ 2.35
CCM2-218ENST00000541586 LCHNA4D1U4 455 aa29.74■■■□□ 2.35
CCM2-218ENST00000541586 RCCD1A6NED2 376 aa29.74■■■□□ 2.35
CCM2-218ENST00000541586 KIF2AO00139 706 aaPredicted RBP29.74■■■□□ 2.35
CCM2-218ENST00000541586 CLSTN1O94985 981 aa29.74■■■□□ 2.35
CCM2-218ENST00000541586 CUL2Q13617 745 aa29.74■■■□□ 2.35
CCM2-218ENST00000541586 ZNF280BQ86YH2 543 aa29.74■■■□□ 2.35
CCM2-218ENST00000541586 SYT11Q9BT88 431 aa29.74■■■□□ 2.35
CCM2-218ENST00000541586 RC3H2Q9HBD1 1191 aaKnown RBP29.74■■■□□ 2.35
CCM2-218ENST00000541586 ZNF662Q6ZS27 426 aa29.74■■■□□ 2.35
CCM2-218ENST00000541586 VPS36Q86VN1 386 aa29.74■■■□□ 2.35
CCM2-218ENST00000541586 NT5DC4Q86YG4 428 aa29.74■■■□□ 2.35
CCM2-218ENST00000541586 OLIG1Q8TAK6 271 aa29.74■■■□□ 2.35
CCM2-218ENST00000541586 C18orf25Q96B23 403 aaPredicted RBP29.74■■■□□ 2.35
CCM2-218ENST00000541586 MRPL9Q9BYD2 267 aaKnown RBP29.74■■■□□ 2.35
CCM2-218ENST00000541586 CYP26A1O43174 497 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 DDHD2O94830 711 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 KCNE1P15382 129 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 TBXAS1P24557 533 aaPredicted RBP29.73■■■□□ 2.35
CCM2-218ENST00000541586 MAGEA1P43355 309 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 ETF1P62495 437 aaKnown RBP29.73■■■□□ 2.35
CCM2-218ENST00000541586 GRIK3Q13003 919 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 PDZRN4Q6ZMN7 1036 aaPredicted RBP29.73■■■□□ 2.35
CCM2-218ENST00000541586 CMTR2Q8IYT2 770 aaKnown RBP29.73■■■□□ 2.35
CCM2-218ENST00000541586 LRRC43Q8N309 656 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 TMEM130Q8N3G9 435 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 FIBCD1Q8N539 461 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 CXorf38Q8TB03 319 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 JAKMIP2Q96AA8 810 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 PBX4Q9BYU1 374 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 LACRTQ9GZZ8 138 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 XYLT2Q9H1B5 865 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 TRIM10Q9UDY6 481 aa29.73■■■□□ 2.35
CCM2-218ENST00000541586 RALGAPA2Q2PPJ7 1873 aa29.72■■■□□ 2.35
CCM2-218ENST00000541586 KRT19P08727 400 aa29.72■■■□□ 2.35
CCM2-218ENST00000541586 BMS1Q14692 1282 aaKnown RBP29.72■■■□□ 2.35
CCM2-218ENST00000541586 PPP1R10Q96QC0 940 aaKnown RBP29.72■■■□□ 2.35
CCM2-218ENST00000541586 IRX2Q9BZI1 471 aaPredicted RBP29.72■■■□□ 2.35
CCM2-218ENST00000541586 GOLGA2P5Q9HBQ8 144 aa29.72■■■□□ 2.35
CCM2-218ENST00000541586 CACNG4Q9UBN1 327 aa29.72■■■□□ 2.35
CCM2-218ENST00000541586 DERAQ9Y315 318 aa29.72■■■□□ 2.35
CCM2-218ENST00000541586 FNDC1Q4ZHG4 1894 aaPredicted RBP29.71■■■□□ 2.35
CCM2-218ENST00000541586 DDX3XO00571 662 aaKnown RBP eCLIP29.71■■■□□ 2.351e-10■■■□□ 15
CCM2-218ENST00000541586 INPPL1O15357 1258 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 TUBB4AP04350 444 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 ITGB3P05106 788 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 ZNF699Q32M78 642 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 CCDC122Q5T0U0 273 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 RABGGTAQ92696 567 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 NRDE2Q9H7Z3 1164 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 MRPL42Q9Y6G3 142 aaKnown RBP29.71■■■□□ 2.35
CCM2-218ENST00000541586 KRT5P13647 590 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 GUCY2FP51841 1108 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 SYT10Q6XYQ8 523 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 SLC30A5Q8TAD4 765 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 LNX1Q8TBB1 728 aaPredicted RBP29.71■■■□□ 2.35
CCM2-218ENST00000541586 ZNF592Q92610 1267 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 DNAJB4Q9UDY4 337 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 MSRAQ9UJ68 235 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 NAGPAQ9UK23 515 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 PCDHA11Q9Y5I1 949 aa29.71■■■□□ 2.35
CCM2-218ENST00000541586 CASTOR2A6NHX0 329 aa29.7■■■□□ 2.34
CCM2-218ENST00000541586 CA3P07451 260 aa29.7■■■□□ 2.34
CCM2-218ENST00000541586 ACO1P21399 889 aaKnown RBP29.7■■■□□ 2.34
CCM2-218ENST00000541586 SLC47A2Q86VL8 602 aa29.7■■■□□ 2.34
CCM2-218ENST00000541586 GLYCTKQ8IVS8 523 aa29.7■■■□□ 2.34
CCM2-218ENST00000541586 EPS8L1Q8TE68 723 aa29.7■■■□□ 2.34
CCM2-218ENST00000541586 SLC20A1Q8WUM9 679 aa29.7■■■□□ 2.34
CCM2-218ENST00000541586 NIF3L1Q9GZT8 377 aa29.7■■■□□ 2.34
CCM2-218ENST00000541586 SLC38A7Q9NVC3 462 aa29.7■■■□□ 2.34
CCM2-218ENST00000541586 DPP3Q9NY33 737 aa29.7■■■□□ 2.34
CCM2-218ENST00000541586 TUBGCP4Q9UGJ1 667 aa29.7■■■□□ 2.34
CCM2-218ENST00000541586 ITGA11Q9UKX5 1188 aa29.7■■■□□ 2.34
CCM2-218ENST00000541586 NENFQ9UMX5 172 aa29.7■■■□□ 2.34
CCM2-218ENST00000541586 GUCA1BQ9UMX6 200 aa29.7■■■□□ 2.34
CCM2-218ENST00000541586 YBX2Q9Y2T7 364 aaKnown RBP29.7■■■□□ 2.34
CCM2-218ENST00000541586 KRT86O43790 486 aa29.69■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms