RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 HGSO14964 777 aaPredicted RBP14.95□□□□□ -0.02
COLCA1-204ENST00000540738 EIF3EP60228 445 aaKnown RBP14.95□□□□□ -0.02
COLCA1-204ENST00000540738 GIT2Q14161 759 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 POLD3Q15054 466 aaPredicted RBP14.95□□□□□ -0.02
COLCA1-204ENST00000540738 UBA3Q8TBC4 463 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 ADAM2Q99965 735 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 CASTOR2A6NHX0 329 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 POMCP01189 267 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 MYL4P12829 197 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 CCT5P48643 541 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 TUFMP49411 452 aaKnown RBP14.95□□□□□ -0.02
COLCA1-204ENST00000540738 PPM1LQ5SGD2 360 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 HACD3Q9P035 362 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 SLC13A4Q9UKG4 626 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 RASGRF2O14827 1237 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 DDX5P17844 614 aaKnown RBP14.95□□□□□ -0.02
COLCA1-204ENST00000540738 RARRES1P49788 294 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 SH2D4BQ5SQS7 431 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 THEMIS2Q5TEJ8 643 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 USP49Q70CQ1 688 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 FIBCD1Q8N539 461 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 EXT2Q93063 718 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 MCEEQ96PE7 176 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 OLA1Q9NTK5 396 aaKnown RBP14.95□□□□□ -0.02
COLCA1-204ENST00000540738 INTS9Q9NV88 658 aaKnown RBP14.95□□□□□ -0.02
COLCA1-204ENST00000540738 SNTG2Q9NY99 539 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 ZNF280AP59817 542 aaPredicted RBP14.95□□□□□ -0.02
COLCA1-204ENST00000540738 MRPS6P82932 125 aaKnown RBP14.95□□□□□ -0.02
COLCA1-204ENST00000540738 SATB1Q01826 763 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 SYTL3Q4VX76 610 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 TATDN1Q6P1N9 297 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 ZBTB18Q99592 522 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 VCX3BQ9H321 246 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 FBXO44Q9H4M3 255 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 SLC25A13Q9UJS0 675 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 ROBO1Q9Y6N7 1651 aa14.95□□□□□ -0.02
COLCA1-204ENST00000540738 NFASCO94856 1347 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 UBA6A0AVT1 1052 aaPredicted RBP14.94□□□□□ -0.02
COLCA1-204ENST00000540738 UNCXA6NJT0 531 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 SLC18A3Q16572 532 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 FAM171A1Q5VUB5 890 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 EGFL8Q99944 293 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 HAUS8Q9BT25 410 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 HMGB1P1B2RPK0 211 aaPredicted RBP14.94□□□□□ -0.02
COLCA1-204ENST00000540738 PPM1AP35813 382 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 GRIK5Q16478 980 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 DHX40Q8IX18 779 aaKnown RBP14.94□□□□□ -0.02
COLCA1-204ENST00000540738 OLFML3Q9NRN5 406 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 KNDC1Q76NI1 1749 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 GRID2IPA4D2P6 1211 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 TEX33O43247 280 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 ESRRBO95718 433 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 BOLA3Q53S33 107 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 CCDC149Q6ZUS6 474 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 ZNF720Q7Z2F6 126 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 CD99L2Q8TCZ2 262 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 RPRD1AQ96P16 312 aaPredicted RBP14.94□□□□□ -0.02
COLCA1-204ENST00000540738 SEZ6LQ9BYH1 1024 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 IL25Q9H293 177 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 DDIT4Q9NX09 232 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 KPNA7A9QM74 516 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 AKT1P31749 480 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 SLC12A1Q13621 1099 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 TRIM59Q8IWR1 403 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 USP38Q8NB14 1042 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 CDC26Q8NHZ8 85 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 RAPGEF5Q92565 580 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 SUDS3Q9H7L9 328 aaPredicted RBP14.94□□□□□ -0.02
COLCA1-204ENST00000540738 SLIT2O94813 1529 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 ARHGAP25P42331 645 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 IRX4P78413 519 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 TWF1Q12792 350 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 STARD3Q14849 445 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 ATG16L1Q676U5 607 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 OTOP1Q7RTM1 612 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 UROC1Q96N76 676 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 TLR8Q9NR97 1041 aaKnown RBP14.94□□□□□ -0.02
COLCA1-204ENST00000540738 PYCARDQ9ULZ3 195 aa14.94□□□□□ -0.02
COLCA1-204ENST00000540738 PIK3CDO00329 1044 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 ADCY6O43306 1168 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 SYNCRIPO60506 623 aaKnown RBP14.93□□□□□ -0.02
COLCA1-204ENST00000540738 SEZ6Q53EL9 994 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 CBWD2Q8IUF1 395 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.93□□□□□ -0.02
COLCA1-204ENST00000540738 WDCPQ9H6R7 721 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 KRT14P02533 472 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 SMIM10L2AP0DMW4 78 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 SMIM10L2BP0DMW5 78 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 BTNL9Q6UXG8 535 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 PLPPR4Q7Z2D5 763 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 ACOT1Q86TX2 421 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 ZC3H18Q86VM9 953 aaKnown RBP14.93□□□□□ -0.02
COLCA1-204ENST00000540738 SLC30A5Q8TAD4 765 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 SYT15Q9BQS2 421 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 FBXL21Q9UKT6 434 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 IFT172Q9UG01 1749 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 USP2O75604 605 aaPredicted RBP14.93□□□□□ -0.02
COLCA1-204ENST00000540738 BRD2P25440 801 aaKnown RBP14.93□□□□□ -0.02
COLCA1-204ENST00000540738 GPS1Q13098 491 aa14.93□□□□□ -0.02
COLCA1-204ENST00000540738 AMHR2Q16671 573 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms