RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 ATG4AQ8WYN0 398 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 CLMNQ96JQ2 1002 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 AP5M1Q9H0R1 490 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 FAM169AQ9Y6X4 670 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 ANKRD31Q8N7Z5 1873 aa11.41□□□□□ -0.58
CLIP1-213ENST00000540338 A0A087WUV0 522 aaPredicted RBP11.4□□□□□ -0.58
CLIP1-213ENST00000540338 AGPSO00116 658 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 C4BPAP04003 597 aaKnown RBP11.4□□□□□ -0.58
CLIP1-213ENST00000540338 NFX1Q12986 1120 aaKnown RBP11.4□□□□□ -0.58
CLIP1-213ENST00000540338 PLPPR4Q7Z2D5 763 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 HSPH1Q92598 858 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 GCOM2Q9BZD3 368 aaPredicted RBP11.4□□□□□ -0.58
CLIP1-213ENST00000540338 IFT122Q9HBG6 1241 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 SAYSD1Q9NPB0 183 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 TBK1Q9UHD2 729 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 ADGRA3Q8IWK6 1321 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 CCL15-CCL14A0A0B4J2E2 113 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 AGTP01019 485 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 SP2Q02086 613 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 CCL15Q16663 113 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 TTMPQ5BVD1 217 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 CENPUQ71F23 418 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 OR6B3Q8NGW1 331 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 PGAP2Q9UHJ9 254 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 NUB1Q9Y5A7 615 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 SOWAHBA6NEL2 793 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 RARGP13631 454 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 INSRRP14616 1297 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 DRG2P55039 364 aaKnown RBP11.4□□□□□ -0.58
CLIP1-213ENST00000540338 SLC39A4Q6P5W5 647 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 MOB2Q70IA6 237 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 OR6J1Q8NGC5 347 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 FAM118BQ9BPY3 351 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 PCYOX1Q9UHG3 505 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 TMEM59LQ9UK28 342 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 MYH10P35580 1976 aa11.4□□□□□ -0.58
CLIP1-213ENST00000540338 EXOC1LA0A1B0GW35 172 aa11.4□□□□□ -0.59
CLIP1-213ENST00000540338 ITGB3P05106 788 aa11.4□□□□□ -0.59
CLIP1-213ENST00000540338 RPL21P46778 160 aaKnown RBP11.4□□□□□ -0.59
CLIP1-213ENST00000540338 ZNF844Q08AG5 666 aa11.4□□□□□ -0.59
CLIP1-213ENST00000540338 GPS1Q13098 491 aa11.4□□□□□ -0.59
CLIP1-213ENST00000540338 FAM102AQ5T9C2 384 aaPredicted RBP11.4□□□□□ -0.59
CLIP1-213ENST00000540338 HHATQ5VTY9 493 aa11.4□□□□□ -0.59
CLIP1-213ENST00000540338 DUPD1Q68J44 220 aa11.4□□□□□ -0.59
CLIP1-213ENST00000540338 SRLQ86TD4 932 aa11.4□□□□□ -0.59
CLIP1-213ENST00000540338 CCDC197Q8NCU1 140 aa11.4□□□□□ -0.59
CLIP1-213ENST00000540338 EXD1Q8NHP7 514 aa11.4□□□□□ -0.59
CLIP1-213ENST00000540338 ACO2Q99798 780 aaKnown RBP11.4□□□□□ -0.59
CLIP1-213ENST00000540338 GPR88Q9GZN0 384 aa11.4□□□□□ -0.59
CLIP1-213ENST00000540338 SNX25Q9H3E2 840 aa11.4□□□□□ -0.59
CLIP1-213ENST00000540338 EFCC1Q9HA90 598 aa11.4□□□□□ -0.59
CLIP1-213ENST00000540338 RGS20O76081 388 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 ITGA8P53708 1063 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 HACE1Q8IYU2 909 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 BEST2Q8NFU1 509 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 COPS5Q92905 334 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 CCT8L2Q96SF2 557 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 NGRNQ9NPE2 291 aaKnown RBP11.39□□□□□ -0.59
CLIP1-213ENST00000540338 WHRNQ9P202 907 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 RGS17Q9UGC6 210 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-213ENST00000540338 MTA2O94776 668 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 STAG3L1P0CL83 205 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 CXCL8P10145 99 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 ARSEP51690 589 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 TFDP2Q14188 446 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 CDO1Q16878 200 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 HSDL1Q3SXM5 330 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 CYP4A22Q5TCH4 519 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 DARS2Q6PI48 645 aaKnown RBP11.39□□□□□ -0.59
CLIP1-213ENST00000540338 PAXIP1Q6ZW49 1069 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-213ENST00000540338 USP50Q70EL3 339 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-213ENST00000540338 ARMCX2Q7L311 632 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 ARHGEF2Q92974 986 aaKnown RBP11.39□□□□□ -0.59
CLIP1-213ENST00000540338 HPDLQ96IR7 371 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 CAPN7Q9Y6W3 813 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 SCN9AQ15858 1988 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 A0A087WZ62 844 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 SPDYE5A6NIY4 337 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 NEBLO76041 1014 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 TNFSF9P41273 254 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 SKOR1P84550 965 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 PLCB4Q15147 1175 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 CCNG2Q16589 344 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 AFG1LQ8WV93 481 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 FDXACB1Q9BRP7 624 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-213ENST00000540338 ROPN1BQ9BZX4 212 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-213ENST00000540338 ROPN1Q9HAT0 212 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-213ENST00000540338 ADAMTS5Q9UNA0 930 aa11.39□□□□□ -0.59
CLIP1-213ENST00000540338 A6NJR5 290 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 BASP1P80723 227 aaKnown RBP11.38□□□□□ -0.59
CLIP1-213ENST00000540338 TMED2Q15363 201 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 PTGISQ16647 500 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 C1orf220Q5T0J3 134 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 ARHGEF18Q6ZSZ5 1173 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 PCGF5Q86SE9 256 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 TTC25Q96NG3 672 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 GPR20Q99678 358 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 SH3GL2Q99962 352 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 SEC24CP53992 1094 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 HIRAP54198 1017 aaPredicted RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms