RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 FAM89AQ96GI7 184 aa11.27□□□□□ -0.61
RTN3-208ENST00000537981 KLF6Q99612 283 aaPredicted RBP11.27□□□□□ -0.61
RTN3-208ENST00000537981 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.27□□□□□ -0.61
RTN3-208ENST00000537981 ALG6Q9Y672 507 aa11.27□□□□□ -0.61
RTN3-208ENST00000537981 ALS2Q96Q42 1657 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 DYTNA2CJ06 578 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 DCAF8L1A6NGE4 600 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 CAPN8A6NHC0 703 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 POTEMA6NI47 508 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 E5RJQ4 531 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 POC1B-GALNT4F8VUJ3 575 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 CA4P22748 312 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 PON1P27169 355 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 CHRNA3P32297 505 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 VCPP55072 806 aaKnown RBP11.26□□□□□ -0.61
RTN3-208ENST00000537981 NOP14P78316 857 aaKnown RBP11.26□□□□□ -0.61
RTN3-208ENST00000537981 KRT17Q04695 432 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 LRRC63Q05C16 580 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 CAMK2BQ13554 666 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 PFKFB3Q16875 520 aaPredicted RBP11.26□□□□□ -0.61
RTN3-208ENST00000537981 SLC35G1Q2M3R5 365 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 DCAF6Q58WW2 860 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 FAM47AQ5JRC9 791 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 C1orf146Q5VVC0 180 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 C16orf87Q6PH81 154 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 CCDC174Q6PII3 467 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 LVRNQ6Q4G3 990 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 RGS9BPQ6ZS82 235 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 UNC13DQ70J99 1090 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 TMC7Q7Z402 723 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 CROCCP2Q86T23 111 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 SYCE1Q8N0S2 351 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.26□□□□□ -0.613e-7■■■□□ 19.1
RTN3-208ENST00000537981 DDX12PQ92771 950 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 SKA1Q96BD8 255 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 RUNDC3BQ96NL0 473 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 NEURL2Q9BR09 285 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 MRPL1Q9BYD6 325 aaKnown RBP11.26□□□□□ -0.61
RTN3-208ENST00000537981 TAOK3Q9H2K8 898 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 TPK1Q9H3S4 243 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 KIAA1586Q9HCI6 787 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 BCS1LQ9Y276 419 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 AXIN2Q9Y2T1 843 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 KAT6AQ92794 2004 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 KIF13BQ9NQT8 1826 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 BTBD19C9JJ37 291 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 M0R2N6 131 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 CCNT1O60563 726 aaKnown RBP11.26□□□□□ -0.61
RTN3-208ENST00000537981 C6orf222P0C671 652 aaPredicted RBP11.26□□□□□ -0.61
RTN3-208ENST00000537981 PIM1P11309 404 aaPredicted RBP11.26□□□□□ -0.61
RTN3-208ENST00000537981 FOLH1Q04609 750 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 LDLRAD1Q5T700 205 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 TTC39BQ5VTQ0 682 aaPredicted RBP11.26□□□□□ -0.61
RTN3-208ENST00000537981 NLRP10Q86W26 655 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 GRIN3AQ8TCU5 1115 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 MPHOSPH6Q99547 160 aaKnown RBP11.26□□□□□ -0.61
RTN3-208ENST00000537981 HERPUD2Q9BSE4 406 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 TMEM120AQ9BXJ8 343 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 MAK16Q9BXY0 300 aaKnown RBP11.26□□□□□ -0.61
RTN3-208ENST00000537981 IKZF4Q9H2S9 585 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 EPB41L1Q9H4G0 881 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 TRABDQ9H4I3 376 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 TIMMDC1Q9NPL8 285 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 ASIC3Q9UHC3 531 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 TCEAL9Q9UHQ7 104 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 LGALS13Q9UHV8 139 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 FAF1Q9UNN5 650 aaPredicted RBP11.26□□□□□ -0.61
RTN3-208ENST00000537981 PLA2G4CQ9UP65 541 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.26□□□□□ -0.61
RTN3-208ENST00000537981 AK5Q9Y6K8 562 aa11.26□□□□□ -0.61
RTN3-208ENST00000537981 RTL9Q8NET4 1388 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 NFAT5O94916 1531 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 FUOMA2VDF0 154 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 A6NL46 340 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 GOLGA8RI6L899 631 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 IVDP26440 423 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 ACTR3P61158 418 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 FKBP3Q00688 224 aaKnown RBP11.25□□□□□ -0.61
RTN3-208ENST00000537981 MECOMQ03112 1051 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 ITGA9Q13797 1035 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 FASTKD3Q14CZ7 662 aaKnown RBP11.25□□□□□ -0.61
RTN3-208ENST00000537981 CLPPQ16740 277 aaPredicted RBP11.25□□□□□ -0.61
RTN3-208ENST00000537981 METTL21CQ5VZV1 264 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 KRT27Q7Z3Y8 459 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 ZNF276Q8N554 614 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 SYT2Q8N9I0 419 aaPredicted RBP11.25□□□□□ -0.61
RTN3-208ENST00000537981 GDPD5Q8WTR4 605 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 TRIM11Q96F44 468 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 CSRNP1Q96S65 589 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 RBM15Q96T37 977 aaKnown RBP eCLIP11.25□□□□□ -0.614e-7■■■□□ 16.7
RTN3-208ENST00000537981 LRRC27Q9C0I9 530 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 BCAS3Q9H6U6 928 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 SIX2Q9NPC8 291 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 CHST7Q9NS84 486 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 SEPT11Q9NVA2 429 aaKnown RBP11.25□□□□□ -0.61
RTN3-208ENST00000537981 TRNAU1APQ9NX07 287 aaKnown RBP11.25□□□□□ -0.61
RTN3-208ENST00000537981 DDX25Q9UHL0 483 aaKnown RBP11.25□□□□□ -0.61
RTN3-208ENST00000537981 FARP1Q9Y4F1 1045 aaPredicted RBP11.25□□□□□ -0.61
RTN3-208ENST00000537981 CDH16O75309 829 aa11.25□□□□□ -0.61
RTN3-208ENST00000537981 KRT38O76015 456 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms