RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 USP11P51784 963 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 CLCNKBP51801 687 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 RHDQ02161 417 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 BFSP1Q12934 665 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 PREPLQ4J6C6 727 aaPredicted RBP10.09□□□□□ -0.79
USP28-205ENST00000537706 C2orf27AQ580R0 203 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 SLCO6A1Q86UG4 719 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 RAB11FIP4Q86YS3 637 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 PGBD3Q8N328 593 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 DAGLBQ8NCG7 672 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 MDGA1Q8NFP4 955 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 OLIG1Q8TAK6 271 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 SETD7Q8WTS6 366 aaKnown RBP10.09□□□□□ -0.79
USP28-205ENST00000537706 LRRC3BQ96PB8 259 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 OXCT2Q9BYC2 517 aaPredicted RBP10.09□□□□□ -0.79
USP28-205ENST00000537706 NFKBIZQ9BYH8 718 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 ZDHHC5Q9C0B5 715 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 EBF3Q9H4W6 596 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 FSCN3Q9NQT6 498 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 NUB1Q9Y5A7 615 aa10.09□□□□□ -0.79
USP28-205ENST00000537706 DSPP15924 2871 aaKnown RBP10.08□□□□□ -0.8
USP28-205ENST00000537706 I3L4J1 428 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 PSMD10O75832 226 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 GNSP15586 552 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 GABRR2P28476 465 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 MARCKSP29966 332 aaPredicted RBP10.08□□□□□ -0.8
USP28-205ENST00000537706 NBR1Q14596 966 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 TAF12Q16514 161 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 XKR9Q5GH70 373 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 STXBP5Q5T5C0 1151 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 CDR2LQ86X02 465 aaPredicted RBP10.08□□□□□ -0.8
USP28-205ENST00000537706 TMC8Q8IU68 726 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 LENG9Q96B70 501 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 PRIMPOLQ96LW4 560 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 PNMA5Q96PV4 448 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 FAM83CQ9BQN1 747 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 FAM124BQ9H5Z6 455 aaPredicted RBP10.08□□□□□ -0.8
USP28-205ENST00000537706 PRMT7Q9NVM4 692 aaPredicted RBP10.08□□□□□ -0.8
USP28-205ENST00000537706 MMP17Q9ULZ9 603 aa10.08□□□□□ -0.8
USP28-205ENST00000537706 ZBTB24O43167 697 aaPredicted RBP10.07□□□□□ -0.8
USP28-205ENST00000537706 P4HBP07237 508 aaKnown RBP10.07□□□□□ -0.8
USP28-205ENST00000537706 AVPR1AP37288 418 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 EIF2S3P41091 472 aaKnown RBP10.07□□□□□ -0.8
USP28-205ENST00000537706 IL12RB1P42701 662 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 VEPH1Q14D04 833 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 AMHR2Q16671 573 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 UPP1Q16831 310 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 ZBTB8OSQ8IWT0 167 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 RLN3Q8WXF3 142 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 CHFRQ96EP1 664 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 CCDC43Q96MW1 224 aaKnown RBP10.07□□□□□ -0.8
USP28-205ENST00000537706 C22orf23Q9BZE7 217 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 SLKQ9H2G2 1235 aaPredicted RBP10.07□□□□□ -0.8
USP28-205ENST00000537706 HPS4Q9NQG7 708 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 SLC38A7Q9NVC3 462 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 PCNX2A6NKB5 2137 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 ASCC3Q8N3C0 2202 aaKnown RBP10.07□□□□□ -0.8
USP28-205ENST00000537706 VWA8A3KMH1 1905 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 B4GALT5O43286 388 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 PRAMEF12O95522 483 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 GJA4P35212 333 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 RPL6Q02878 288 aaKnown RBP10.07□□□□□ -0.8
USP28-205ENST00000537706 NAB2Q15742 525 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 CRY1Q16526 586 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 RTN1Q16799 776 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 PLEKHG6Q3KR16 790 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 HSF5Q4G112 596 aaPredicted RBP10.07□□□□□ -0.8
USP28-205ENST00000537706 C20orf194Q5TEA3 1177 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 USP33Q8TEY7 942 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 FNBP1Q96RU3 617 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 LRRC3Q9BY71 257 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 NXF1Q9UBU9 619 aaKnown RBP10.07□□□□□ -0.8
USP28-205ENST00000537706 PCOLCE2Q9UKZ9 415 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 TBX20Q9UMR3 447 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 NUP205Q92621 2012 aa10.07□□□□□ -0.8
USP28-205ENST00000537706 URB1O60287 2271 aaKnown RBP10.06□□□□□ -0.8
USP28-205ENST00000537706 A0A1W2PQD8 194 aa10.06□□□□□ -0.8
USP28-205ENST00000537706 C6P13671 934 aa10.06□□□□□ -0.8
USP28-205ENST00000537706 MRPS21P82921 87 aaKnown RBP10.06□□□□□ -0.8
USP28-205ENST00000537706 DCAF4L1Q3SXM0 396 aa10.06□□□□□ -0.8
USP28-205ENST00000537706 SYCP2LQ5T4T6 812 aa10.06□□□□□ -0.8
USP28-205ENST00000537706 C6orf118Q5T5N4 469 aa10.06□□□□□ -0.8
USP28-205ENST00000537706 TRIM68Q6AZZ1 485 aa10.06□□□□□ -0.8
USP28-205ENST00000537706 B4GALNT3Q6L9W6 998 aa10.06□□□□□ -0.8
USP28-205ENST00000537706 KRI1Q8N9T8 703 aaKnown RBP10.06□□□□□ -0.8
USP28-205ENST00000537706 OR2I1PQ8NGU4 316 aa10.06□□□□□ -0.8
USP28-205ENST00000537706 ZMYND12Q9H0C1 365 aa10.06□□□□□ -0.8
USP28-205ENST00000537706 GDAQ9Y2T3 454 aa10.06□□□□□ -0.8
USP28-205ENST00000537706 HEMK1Q9Y5R4 338 aaPredicted RBP10.06□□□□□ -0.8
USP28-205ENST00000537706 SHROOM3Q8TF72 1996 aa10.06□□□□□ -0.8
USP28-205ENST00000537706 AKAP13Q12802 2813 aa10.06□□□□□ -0.8
USP28-205ENST00000537706 GOLGA8CPA6NN73 597 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 PODXLO00592 558 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 ARSAP15289 507 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 DDX6P26196 483 aaKnown RBP eCLIP10.05□□□□□ -0.8
USP28-205ENST00000537706 U2AF2P26368 475 aaKnown RBP eCLIP10.05□□□□□ -0.8
USP28-205ENST00000537706 YWHABP31946 246 aaKnown RBP10.05□□□□□ -0.8
USP28-205ENST00000537706 IFNAR2P48551 515 aa10.05□□□□□ -0.8
USP28-205ENST00000537706 YARSP54577 528 aaKnown RBP10.05□□□□□ -0.8
USP28-205ENST00000537706 SEC13P55735 322 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms