RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 UBXN4Q92575 508 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 CPB2Q96IY4 423 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 ZFP42Q96MM3 310 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 RTKNQ9BST9 563 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 LTB4R2Q9NPC1 389 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 BLOC1S4Q9NUP1 217 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 RMND1Q9NWS8 449 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 HES2Q9Y543 173 aa8.93□□□□□ -0.98
NEDD8-207ENST00000533242 FAM170BA6NMN3 283 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 TBC1D4O60343 1298 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 KRT9P35527 623 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 TXKP42681 527 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 PPP2R3AQ06190 1150 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 DMTNQ08495 405 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 MXD4Q14582 209 aaPredicted RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 UBXN2BQ14CS0 331 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 EPHA7Q15375 998 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 PPM1LQ5SGD2 360 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 LIN9Q5TKA1 542 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 ANKRD40Q6AI12 368 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 WDR59Q6PJI9 974 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 PRSS55Q6UWB4 352 aaPredicted RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 RSRC2Q7L4I2 434 aaKnown RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 KRT25Q7Z3Z0 450 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 KCNK18Q7Z418 384 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 CNGA4Q8IV77 575 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 GLIS3Q8NEA6 775 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 GSTCDQ8NEC7 633 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 MNS1Q8NEH6 495 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 CLDN23Q96B33 292 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 MTMR9Q96QG7 549 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 NELL2Q99435 816 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 PYM1Q9BRP8 204 aaKnown RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 APOL6Q9BWW8 343 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 WRAP73Q9P2S5 460 aaPredicted RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 SMG5Q9UPR3 1016 aaKnown RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 MTF2Q9Y483 593 aaPredicted RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 SF3B1O75533 1304 aaKnown RBP eCLIP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 EP300Q09472 2414 aaPredicted RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 GOLGA6L9A6NEM1 432 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 LGALS16A8MUM7 142 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 EFCAB8A8MWE9 144 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 XYLBO75191 536 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 TADA2AO75478 443 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 ZRANB2O95218 330 aaKnown RBP eCLIP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 YWHABP31946 246 aaKnown RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 RPS9P46781 194 aaKnown RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 NTHL1P78549 312 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 ECM1Q16610 540 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 XKR9Q5GH70 373 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 ZNF569Q5MCW4 686 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 ZBTB41Q5SVQ8 909 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 TEX35Q5T0J7 233 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 SLC35F6Q8N357 371 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 ST13P5Q8NFI4 369 aaPredicted RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 PIK3R5Q8WYR1 880 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 FGF13Q92913 245 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 PNMA5Q96PV4 448 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 NAA15Q9BXJ9 866 aaKnown RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 TRIM6Q9C030 488 aaPredicted RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 NXF3Q9H4D5 531 aaKnown RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 KCNMB3Q9NPA1 279 aa8.92□□□□□ -0.98
NEDD8-207ENST00000533242 PRMT8Q9NR22 394 aaPredicted RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 CDV3Q9UKY7 258 aaKnown RBP8.92□□□□□ -0.98
NEDD8-207ENST00000533242 COL4A2P08572 1712 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 INO80B-WBP1J3KQ70 363 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 LAD1O00515 517 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 TBX3O15119 743 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 NCAM2O15394 837 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 SASH3O75995 380 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 C8AP07357 584 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 PNMA6AP0CW24 399 aaPredicted RBP8.91□□□□□ -0.98
NEDD8-207ENST00000533242 GCFC2P16383 781 aaKnown RBP8.91□□□□□ -0.98
NEDD8-207ENST00000533242 ARF4P18085 180 aaPredicted RBP8.91□□□□□ -0.98
NEDD8-207ENST00000533242 ASIC1P78348 528 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 MBTD1Q05BQ5 628 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 PSMD5Q16401 504 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 AMHR2Q16671 573 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 RTP2Q5QGT7 225 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 PDXDC1Q6P996 788 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 CLSTN3Q9BQT9 956 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 LXNQ9BS40 222 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 TTPALQ9BTX7 342 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 FAM126AQ9BYI3 521 aaPredicted RBP8.91□□□□□ -0.98
NEDD8-207ENST00000533242 BMP2KQ9NSY1 1161 aaPredicted RBP8.91□□□□□ -0.98
NEDD8-207ENST00000533242 MYMKA6NI61 221 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 PES1O00541 588 aaKnown RBP8.91□□□□□ -0.98
NEDD8-207ENST00000533242 CCL16O15467 120 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 NPTXRO95502 500 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 PLA2G4AP47712 749 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 SPAG1Q07617 926 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 TUSC3Q13454 348 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 MCM6Q14566 821 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 MIIPQ5JXC2 388 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 SLC27A1Q6PCB7 646 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 RTL10Q7L3V2 364 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 GPIHBP1Q8IV16 184 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 CSGALNACT2Q8N6G5 542 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 ITFG1Q8TB96 612 aa8.91□□□□□ -0.98
NEDD8-207ENST00000533242 LNX1Q8TBB1 728 aaPredicted RBP8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms