RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 SKIP12755 728 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 CASQ1P31415 396 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 DEFB103AP81534 67 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 MYO1EQ12965 1108 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 SLC24A5Q71RS6 500 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 GLYCTKQ8IVS8 523 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 TTC39CQ8N584 583 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 SMG8Q8ND04 991 aaKnown RBP22.67■■□□□ 1.22
VPS28-212ENST00000530836 ATRIPQ8WXE1 791 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 SECISBP2LQ93073 1101 aaKnown RBP22.67■■□□□ 1.22
VPS28-212ENST00000530836 SLC9A7Q96T83 725 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 ARID3AQ99856 593 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 FAM105AQ9NUU6 356 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 PARP2Q9UGN5 583 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 HES2Q9Y543 173 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 PCDHB4Q9Y5E5 795 aa22.67■■□□□ 1.22
VPS28-212ENST00000530836 RCCD1A6NED2 376 aa22.66■■□□□ 1.22
VPS28-212ENST00000530836 GZMAP12544 262 aa22.66■■□□□ 1.22
VPS28-212ENST00000530836 ATP2A2P16615 1042 aaKnown RBP22.66■■□□□ 1.22
VPS28-212ENST00000530836 CYP3A5P20815 502 aa22.66■■□□□ 1.22
VPS28-212ENST00000530836 FAM189BP81408 668 aa22.66■■□□□ 1.22
VPS28-212ENST00000530836 CDR2Q01850 454 aa22.66■■□□□ 1.22
VPS28-212ENST00000530836 SLC47A2Q86VL8 602 aa22.66■■□□□ 1.22
VPS28-212ENST00000530836 LNX1Q8TBB1 728 aaPredicted RBP22.66■■□□□ 1.22
VPS28-212ENST00000530836 CYP3A43Q9HB55 503 aa22.66■■□□□ 1.22
VPS28-212ENST00000530836 LAMA2P24043 3122 aaKnown RBP22.66■■□□□ 1.22
VPS28-212ENST00000530836 C9IYK1 514 aa22.65■■□□□ 1.22
VPS28-212ENST00000530836 H2AFZP0C0S5 128 aa22.65■■□□□ 1.22
VPS28-212ENST00000530836 ZNF569Q5MCW4 686 aa22.65■■□□□ 1.22
VPS28-212ENST00000530836 H2AFVQ71UI9 128 aa22.65■■□□□ 1.22
VPS28-212ENST00000530836 NOP9Q86U38 636 aaKnown RBP22.65■■□□□ 1.22
VPS28-212ENST00000530836 LRRC52Q8N7C0 313 aa22.65■■□□□ 1.22
VPS28-212ENST00000530836 UBR7Q8N806 425 aa22.65■■□□□ 1.22
VPS28-212ENST00000530836 TOP1MTQ969P6 601 aa22.65■■□□□ 1.22
VPS28-212ENST00000530836 HPDLQ96IR7 371 aa22.65■■□□□ 1.22
VPS28-212ENST00000530836 AGAP1Q9UPQ3 857 aa22.65■■□□□ 1.22
VPS28-212ENST00000530836 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.64■■□□□ 1.22
VPS28-212ENST00000530836 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.64■■□□□ 1.22
VPS28-212ENST00000530836 ZNF623O75123 536 aa22.64■■□□□ 1.22
VPS28-212ENST00000530836 ATF7P17544 494 aaPredicted RBP22.64■■□□□ 1.22
VPS28-212ENST00000530836 AKAP5P24588 427 aa22.64■■□□□ 1.22
VPS28-212ENST00000530836 POLR2BP30876 1174 aaKnown RBP22.64■■□□□ 1.22
VPS28-212ENST00000530836 ASPAP45381 313 aa22.64■■□□□ 1.22
VPS28-212ENST00000530836 WDR72Q3MJ13 1102 aa22.64■■□□□ 1.22
VPS28-212ENST00000530836 LRIT3Q3SXY7 679 aa22.64■■□□□ 1.22
VPS28-212ENST00000530836 TMEM270Q6UE05 265 aa22.64■■□□□ 1.22
VPS28-212ENST00000530836 CRIPAKQ8N1N5 446 aa22.64■■□□□ 1.22
VPS28-212ENST00000530836 TRIM58Q8NG06 486 aa22.64■■□□□ 1.22
VPS28-212ENST00000530836 OLIG1Q8TAK6 271 aa22.64■■□□□ 1.22
VPS28-212ENST00000530836 APOL6Q9BWW8 343 aa22.64■■□□□ 1.22
VPS28-212ENST00000530836 BCO2Q9BYV7 579 aa22.64■■□□□ 1.22
VPS28-212ENST00000530836 SEPT11Q9NVA2 429 aaKnown RBP22.64■■□□□ 1.22
VPS28-212ENST00000530836 A0A0U1RQF3 1178 aa22.64■■□□□ 1.21
VPS28-212ENST00000530836 SMIM28A0A1B0GU29 152 aa22.64■■□□□ 1.21
VPS28-212ENST00000530836 TACC1O75410 805 aa22.64■■□□□ 1.21
VPS28-212ENST00000530836 ITGA4P13612 1032 aa22.64■■□□□ 1.21
VPS28-212ENST00000530836 FAM109BQ6ICB4 259 aaPredicted RBP22.64■■□□□ 1.21
VPS28-212ENST00000530836 PPP1R2P3Q6NXS1 205 aa22.64■■□□□ 1.21
VPS28-212ENST00000530836 MRPL10Q7Z7H8 261 aaKnown RBP22.64■■□□□ 1.21
VPS28-212ENST00000530836 RBBP8NLQ8NC74 664 aaPredicted RBP22.64■■□□□ 1.21
VPS28-212ENST00000530836 SLC20A1Q8WUM9 679 aa22.64■■□□□ 1.21
VPS28-212ENST00000530836 ELMO3Q96BJ8 720 aa22.64■■□□□ 1.21
VPS28-212ENST00000530836 ZMAT2Q96NC0 199 aaKnown RBP22.64■■□□□ 1.21
VPS28-212ENST00000530836 ALS2CR12Q96Q35 445 aa22.64■■□□□ 1.21
VPS28-212ENST00000530836 CISHQ9NSE2 258 aa22.64■■□□□ 1.21
VPS28-212ENST00000530836 TRIM10Q9UDY6 481 aa22.64■■□□□ 1.21
VPS28-212ENST00000530836 GIT1Q9Y2X7 761 aa22.64■■□□□ 1.21
VPS28-212ENST00000530836 LAMA3Q16787 3333 aa22.63■■□□□ 1.21
VPS28-212ENST00000530836 A0A0A6YYK5 440 aaPredicted RBP22.63■■□□□ 1.21
VPS28-212ENST00000530836 ABL1P00519 1130 aa22.63■■□□□ 1.21
VPS28-212ENST00000530836 ZNF132P52740 706 aa22.63■■□□□ 1.21
VPS28-212ENST00000530836 IFI16Q16666 785 aaKnown RBP22.63■■□□□ 1.21
VPS28-212ENST00000530836 TMCO2Q7Z6W1 182 aaPredicted RBP22.63■■□□□ 1.21
VPS28-212ENST00000530836 HERC6Q8IVU3 1022 aa22.63■■□□□ 1.21
VPS28-212ENST00000530836 DDX1Q92499 740 aaKnown RBP22.63■■□□□ 1.21
VPS28-212ENST00000530836 CALR3Q96L12 384 aaKnown RBP22.63■■□□□ 1.21
VPS28-212ENST00000530836 NOX5Q96PH1 765 aa22.63■■□□□ 1.21
VPS28-212ENST00000530836 WDR24Q96S15 920 aa22.63■■□□□ 1.21
VPS28-212ENST00000530836 IRX2Q9BZI1 471 aaPredicted RBP22.63■■□□□ 1.21
VPS28-212ENST00000530836 UBN1Q9NPG3 1134 aa22.63■■□□□ 1.21
VPS28-212ENST00000530836 SLC38A7Q9NVC3 462 aa22.63■■□□□ 1.21
VPS28-212ENST00000530836 NXF1Q9UBU9 619 aaKnown RBP22.63■■□□□ 1.21
VPS28-212ENST00000530836 CTAGE9A4FU28 777 aa22.62■■□□□ 1.21
VPS28-212ENST00000530836 RTN2O75298 545 aa22.62■■□□□ 1.21
VPS28-212ENST00000530836 PNPLA4P41247 253 aa22.62■■□□□ 1.21
VPS28-212ENST00000530836 TRIM72Q6ZMU5 477 aa22.62■■□□□ 1.21
VPS28-212ENST00000530836 PGBD4Q96DM1 585 aa22.62■■□□□ 1.21
VPS28-212ENST00000530836 ISCUQ9H1K1 167 aa22.62■■□□□ 1.21
VPS28-212ENST00000530836 RNF39Q9H2S5 420 aa22.62■■□□□ 1.21
VPS28-212ENST00000530836 RNF216Q9NWF9 866 aaPredicted RBP22.62■■□□□ 1.21
VPS28-212ENST00000530836 MACROD2A1Z1Q3 448 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 ANKRD62A6NC57 917 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 GRXCR1A8MXD5 290 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 UPP2O95045 317 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 GJB5O95377 273 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 TMEM253P0C7T8 217 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 CHRNB2P17787 502 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 GNA15P30679 374 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 TNNC1P63316 161 aa22.61■■□□□ 1.21
VPS28-212ENST00000530836 FMO1Q01740 532 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms