RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 NUBP1P53384 320 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 GPR17Q13304 367 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 SLC5A9Q2M3M2 681 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 SV2CQ496J9 727 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 CWF19L1Q69YN2 538 aaKnown RBP14.38□□□□□ -0.11
VPS28-211ENST00000530790 PARM1Q6UWI2 310 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 UNC13DQ70J99 1090 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 METTL23Q86XA0 190 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 CEP57L1Q8IYX8 460 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 GPD1LQ8N335 351 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 GLIS3Q8NEA6 775 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 ZSWIM2Q8NEG5 633 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 CACTINQ8WUQ7 758 aaKnown RBP14.38□□□□□ -0.11
VPS28-211ENST00000530790 C7orf25Q9BPX7 421 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 PCIF1Q9H4Z3 704 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 GDE1Q9NZC3 331 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 WNT16Q9UBV4 365 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 DOCK8Q8NF50 2099 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 ZDBF2Q9HCK1 2354 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 UBE4BO95155 1302 aa14.38□□□□□ -0.11
VPS28-211ENST00000530790 CYB561D2O14569 222 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 TMEM191BP0C7N4 346 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 POLR2BP30876 1174 aaKnown RBP14.37□□□□□ -0.11
VPS28-211ENST00000530790 CLCN5P51795 746 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 WNT7BP56706 349 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 KRT85P78386 507 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 PRSS36Q5K4E3 855 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 CYP4A22Q5TCH4 519 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 TMEM105Q8N8V8 129 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 LEMD2Q8NC56 503 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 GPR152Q8TDT2 470 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 ZNF512Q96ME7 567 aaPredicted RBP14.37□□□□□ -0.11
VPS28-211ENST00000530790 BLZF1Q9H2G9 400 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 ASAH2Q9NR71 780 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 RCOR1Q9UKL0 485 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 CA14Q9ULX7 337 aa14.37□□□□□ -0.11
VPS28-211ENST00000530790 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.36□□□□□ -0.11
VPS28-211ENST00000530790 MTMR11A4FU01 709 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 KPNA7A9QM74 516 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 ITGB3P05106 788 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 CASP1P29466 404 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 AFMP43652 599 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 ALDH1A3P47895 512 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 EPM2AIP1Q7L775 607 aaPredicted RBP14.36□□□□□ -0.11
VPS28-211ENST00000530790 THEM5Q8N1Q8 247 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 C1orf127Q8N9H9 656 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 OR10T2Q8NGX3 314 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 MCRS1Q96EZ8 462 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 SPATA32Q96LK8 384 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 KXD1Q9BQD3 176 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 MTMR12Q9C0I1 747 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 PDE11AQ9HCR9 933 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 ARHGEF3Q9NR81 526 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 SLC2A4RGQ9NR83 387 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 HSPBP1Q9NZL4 362 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 CEP72Q9P209 647 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 ITGA11Q9UKX5 1188 aa14.36□□□□□ -0.11
VPS28-211ENST00000530790 MYO10Q9HD67 2058 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 PVALEFA0A1B0GWK0 134 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 KRBA1A5PL33 1030 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 ZNF233A6NK53 670 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 STK25O00506 426 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 GALR2O43603 387 aaPredicted RBP14.35□□□□□ -0.11
VPS28-211ENST00000530790 MICAL2O94851 1124 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 VNN2O95498 520 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 KRT19P08727 400 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 MYL4P12829 197 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 AOC1P19801 751 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 HOXD11P31277 338 aaPredicted RBP14.35□□□□□ -0.11
VPS28-211ENST00000530790 EPHB3P54753 998 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 EHHADHQ08426 723 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 TCF15Q12870 199 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 BFSP1Q12934 665 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 DUSP4Q13115 394 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 CUL4BQ13620 913 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 SLC39A12Q504Y0 691 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 WSCD1Q658N2 575 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 CENPPQ6IPU0 288 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 HS2ST1Q7LGA3 356 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 NELFCDQ8IXH7 590 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 LRRC52Q8N7C0 313 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 LEO1Q8WVC0 666 aaPredicted RBP14.35□□□□□ -0.11
VPS28-211ENST00000530790 TCEAL4Q96EI5 215 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 ANKRD36BP1Q96IX9 119 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 TMEM209Q96SK2 561 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 RTP3Q9BQQ7 232 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 RPP25Q9BUL9 199 aaKnown RBP14.35□□□□□ -0.11
VPS28-211ENST00000530790 IRF2BPLQ9H1B7 796 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 CRISPLD1Q9H336 500 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 TBC1D17Q9HA65 648 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 KIAA1586Q9HCI6 787 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 AGPAT3Q9NRZ7 376 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 HSFX1Q9UBD0 423 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 AGAP1Q9UPQ3 857 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 R3HCC1Q9Y3T6 440 aaKnown RBP14.35□□□□□ -0.11
VPS28-211ENST00000530790 ATP6V1DQ9Y5K8 247 aa14.35□□□□□ -0.11
VPS28-211ENST00000530790 HUS1O60921 280 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 ECI2O75521 394 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 SLFN14P0C7P3 912 aa14.34□□□□□ -0.11
VPS28-211ENST00000530790 PFKFB1P16118 471 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms